Gene detail

Detail information of GWHGAAZE000881

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI16286.3	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q75IM9\|IVD_ORYSJ	Isovaleryl-CoA dehydrogenase, mitochondrial (Precursor)
trEMBL	tr\|D7SKV8\|D7SKV8_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI16286.3}
TAIR10	AT3G45300.1	isovaleryl-CoA-dehydrogenase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	18760324	18767110	+
GWHAAZE00000001	mRNA	18760324	18767110	+
GWHAAZE00000001	exon	18760324	18760437	+
GWHAAZE00000001	exon	18760521	18760578	+
GWHAAZE00000001	exon	18761395	18761519	+
GWHAAZE00000001	exon	18761611	18761655	+
GWHAAZE00000001	exon	18762835	18762883	+
GWHAAZE00000001	exon	18763036	18763145	+
GWHAAZE00000001	exon	18763825	18763901	+
GWHAAZE00000001	exon	18764188	18764238	+
GWHAAZE00000001	exon	18764341	18764405	+
GWHAAZE00000001	exon	18764896	18765091	+
GWHAAZE00000001	exon	18765177	18765231	+
GWHAAZE00000001	exon	18765963	18766019	+
GWHAAZE00000001	exon	18766967	18767110	+
GWHAAZE00000001	CDS	18760324	18760437	+
GWHAAZE00000001	CDS	18760521	18760578	+
GWHAAZE00000001	CDS	18761395	18761519	+
GWHAAZE00000001	CDS	18761611	18761655	+
GWHAAZE00000001	CDS	18762835	18762883	+
GWHAAZE00000001	CDS	18763036	18763145	+
GWHAAZE00000001	CDS	18763825	18763901	+
GWHAAZE00000001	CDS	18764188	18764238	+
GWHAAZE00000001	CDS	18764341	18764405	+
GWHAAZE00000001	CDS	18764896	18765091	+
GWHAAZE00000001	CDS	18765177	18765231	+
GWHAAZE00000001	CDS	18765963	18766019	+
GWHAAZE00000001	CDS	18766967	18767110	+

Transcript Sequence
>GWHTAAZE000883 TCTCCGACAGCTTTGTTACATTGTTTACAGTTTAAAGAAAGTGTTGCACAGTTTGCCCAAGAAAATATTGCCCCTCACGCTTCAGAAATAGACAGAACAAACTATTTCCCAAAGGAGGTTAACTTATGGAAACTAATGGGAGATTTTAATCTTCACGGAATTACTGCGCCAGAGGAATATGGAGGACTTGGCCTTGGTTATCTATATCACTGTATAGCTATGGAAGAAATTAGTCGCACTTCTGGGTCTGTTGGCCTATCGTATGGAGCCCATACTAACCTGTGCATTAACCAGTTGGTGAGGAATGGGAACCCTGCTCAGAAGCAGAAATACTTGCCCAAGCTAATTAGTGGGGAGCATGTGGGAGCTCTTGCAATGAGCGAGCCCAATGCCGGCTCTGATGTTGTTAGTATGAAATGTAAGGCTGATCGAGTTGATGGGGGTTATGTATTAAATGGGAACAAGATGTGGTGCACAAACGGTCCAATTGCTCAAACACTGGTGGTTTATGCAAAAACGGATATTGCTGCTGGCTCGAAAGGAATAACAGCATTTATCATTGAGAAGGGAATGCCCGGTTTCAGTACTGCCCAGAAATTAGACAAACTTGGAATGCGAGGAAGTGATACATGTGAGCTTGTATTTGAGAATTGCTTTGTTCCTGAAGAAAATGTCCTTGGGCAGGAAGGAAAAGGAGTATATGTGATGTTGTCGGGGCTAGATTTAGAGAGGCTTGTTTTGGCCTCTGGACCCCTTGGGCTTATGCAGGCATGTCTAGACGTTGTTCTTCCTTACATTAAACAACGAGAACAGTTTGGTCGCCCCATTGGTGAATTTCAGTTTATACAGGGGAAGGTTGCAGACATGTATACTGCATTACAGTCTTCAAGGTCCTATGTTTATTCTGTGGCGAGGGAATGTGACAACGGAAAAGTTGATTCAAAGGATTGTGCTGGAGTTATACTTATTGCTGCTGAAAGAGCCACCCAAGTTGCCCTTCAGGCTATTCAATGTCTAGGTGGCAACGGATATGTAAATGAGTACACCACTGGCCGTCTTCTTCGAGACGCCAAGTTGTATGAGATTGGTGCTGGAACTAGCGAGGTTAGACGAATGATAATTGGTCGTGCGCTCTTTAAGGAATAG

Network for GWHGAAZE000881

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02771.17	Acyl-CoA_dh_N	10	119	1.90E-34
PF02770.20	Acyl-CoA_dh_M	123	218	3.70E-26
PF00441.25	Acyl-CoA_dh_1	230	378	1.60E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00253	IVD, ivd	Metabolic pathways	map01100
K00253	IVD, ivd	Valine, leucine and isoleucine degradation	map00280

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016627	molecular_function	oxidoreductase activity, acting on the CH-CH group of donors
GO:0050660	molecular_function	flavin adenine dinucleotide binding
GO:0003995	molecular_function	acyl-CoA dehydrogenase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.705
	SRR3591706	second leaf	12.072
	SRR3591707	mature leaf	14.392
	SRR3591708	Shoot apex	18.954
	SRR3591709	Stem	25.339
	SRR3591710	White floral bud	55.877
	SRR3591711	White flower	60.452
	SRR3591712	Green floral bud	54.232
	SRR3591713	Yellow flower	67.955
SRP173429	SRR8316895	Juvenile bud stage	17.676
	SRR8316896	Juvenile bud stage	37.743
	SRR8316897	Juvenile bud stage	16.189
	SRR8316894	Third green stage	15.865
	SRR8316900	Third green stage	50.672
	SRR8316901	Third green stage	49.180
	SRR8316898	Complete white stage	17.602
	SRR8316899	Complete white stage	33.742
	SRR8316903	Complete white stage	25.896
	SRR8316902	Silver flowering stage	22.305
	SRR8316904	Silver flowering stage	29.210
	SRR8316905	Silver flowering stage	15.411
	SRR8316906	Gold flowering stage	44.428
	SRR8316907	Gold flowering stage	49.390
	SRR8316908	Gold flowering stage	49.962
SRP132670	SRR6706286	Control	43.800
	SRR6706287	Light intensity 50%	44.960
	SRR6706288	Light intensity 20%	44.546
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.229
	CNS0095593	Slightly white alabastrum(diploid) 2	29.247
	CNS0095594	Slightly white alabastrum(diploid) 3	31.720
	CNS0095595	Whole white alabastrum(diploid) 2	35.130
	CNS0095596	Whole white alabastrum(diploid) 3	42.485
	CNS0095597	Whole white alabastrum(diploid) 4	35.693
	CNS0095598	Silvery flower (diploied) 1	24.942
	CNS0095599	Silvery flower (diploied) 2	21.445
	CNS0095600	Silvery flower (diploied) 3	64.432
	CNS0095601	Golden flower (diploid) 1	24.110
	CNS0095602	Golden flower (diploid) 2	40.851
	CNS0095603	Golden flower (diploid) 3	44.328
	CNS0095604	Slightly white alabastrum(tetraploid) 1	45.805
	CNS0095605	Slightly white alabastrum(tetraploid) 2	42.534
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.212
	CNS0095607	Whole white alabastrum(tetraploid) 1	42.096
	CNS0095608	Whole white alabastrum(tetraploid) 2	50.317
	CNS0095609	Whole white alabastrum(tetraploid) 3	53.560
	CNS0095610	Silvery flower (tetraploid) 1	77.279
	CNS0095611	Silvery flower (tetraploid) 2	74.681
	CNS0095612	Silvery flower (tetraploid) 3	76.750
	CNS0095613	Golden flower (tetraploid) 1	42.315
	CNS0095614	Golden flower (tetraploid) 2	57.198
	CNS0095615	Golden flower (tetraploid) 3	69.632
CRA001975	CRR073297	Stem 1	29.321
	CRR073298	Stem 2	29.939
	CRR073299	Stem 3	28.533
	CRR073300	Leaf 1	25.394
	CRR073301	Leaf 2	28.656
	CRR073302	Leaf 3	27.949
	CRR073303	Juvenile bud 1	30.949
	CRR073304	Juvenile bud 2	29.215
	CRR073305	Juvenile bud 3	23.556
	CRR073306	Third green 1	26.964
	CRR073307	Third green 2	23.666
	CRR073308	Third green 3	22.528
	CRR073309	Second white 1	33.068
	CRR073310	Second white 2	25.520
	CRR073311	Second white 3	24.041
	CRR073312	Silver flowering 1	26.762
	CRR073313	Silver flowering 2	27.494
	CRR073314	Silver flowering 3	26.909
	CRR073315	Gold flowering 1	18.024
	CRR073316	Gold flowering 2	27.127
	CRR073317	Gold flowering 3	15.234
	CRR073318	Tawny withering 1	15.810
	CRR073319	Tawny withering 2	12.765
	CRR073320	Tawny withering 3	17.904