Gene detail

Detail information of GWHGAAZE000887

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHF98349.1	0	putative catabolite repression creC [Gossypium arboreum]
trEMBL	tr\|A5B491\|A5B491_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN60932.1}
TAIR10	AT3G53390.1	2E-124	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	18862905	18872291	+
GWHAAZE00000001	mRNA	18862905	18872291	+
GWHAAZE00000001	exon	18862905	18863081	+
GWHAAZE00000001	exon	18865733	18866044	+
GWHAAZE00000001	exon	18867056	18867139	+
GWHAAZE00000001	exon	18869016	18869112	+
GWHAAZE00000001	exon	18869203	18869290	+
GWHAAZE00000001	exon	18869840	18869945	+
GWHAAZE00000001	exon	18870033	18870125	+
GWHAAZE00000001	exon	18871872	18872291	+
GWHAAZE00000001	CDS	18862905	18863081	+
GWHAAZE00000001	CDS	18865733	18866044	+
GWHAAZE00000001	CDS	18867056	18867139	+
GWHAAZE00000001	CDS	18869016	18869112	+
GWHAAZE00000001	CDS	18869203	18869290	+
GWHAAZE00000001	CDS	18869840	18869945	+
GWHAAZE00000001	CDS	18870033	18870125	+
GWHAAZE00000001	CDS	18871872	18872291	+

Transcript Sequence
>GWHTAAZE000889 ATGATCAACAGCACCGCCTCCACCACCACAATCAACGGCTCGATGTCTCCGTCGAACGCTCAATCTCAAGGCCTTAAAACCTACTTCAAAACTCCCGAAGGCCGGTACAAGCTCAAATACGAAAAGTCTCATCCATCTGGTCTACTTCCTTATGCTCTCGCTAAATCCATCACTCAGATAACCCTTGCGAACCTTAAGGACCAGCCAGCGCAAGCTACGTTGCAGCCGAGCTCGAGCTATAGTGCAAGCAATGGAGTGAGGTTTGTGACATCAAAATTTTTAGGGAGCGGTAATGGAGGCCGAGTACTTAGCTTTGTGGGAGGAAATGGCACCAGTAAAACCAATGGTGGAGCTAGTCGGAATGGTTTGACCGGAGGGTTGAATGGTTTTAATTCTGCGGTTAATTCAAATTGTGATGGTAAAGGGACTTATTTGATATTCAATGTAGGCGATACTTTATATATCAGCGAGCTTAATTCTCAGGATAAGAGCAAGGATGGTGCTGGCGATTCTTCATTCCCTGTCATCAAGGATCAGACTCAATTTTCTGTTGCACATGCACGATCCAGTAAGAGTAATCCGATTGCTAGATGGCATATTTGCCAAGGTTCTGTTAACGGCATTGCCTTTTCAACTGATGGGAAATATTTGGCGACTGTTGGTAGAGATGGTTACTTACGTGTTTTTGACTATTCAAGTGAACAACTGATATGTGGTGGCAAAAGTTATTATGGTGCTCTTTTGTGTTGTGCCTGGAGTGCGGACGGGAAGTACATATTAACAGGAGGTGAGGATGATCTAGTTCAAGTTTGGAGTATGGAAGACAGAAAAGTAGTGGCTTGGGGCGAGGGACACAACTCATGGGTAAGTGGAGTCGCATTTGACTCTTATTGGTCACCACCAACTTCCGAGGACACGGCAGAGAATGTTGTGTATAGATTTGGTTCTGTTGGTCAGGACACACAATTGCTTCTTTGGGACCTGGCAATGGACGAGATTGTGGTCCCTCTTCGGCGGTGCCCCCCCGGCGGGTCCCCACCCGGTGGGTCCCCCACATTCAGCACCGGAAGCCAGTCCGCTCATTGGGACGGTATAGTCCCCATAGGTACCCTACAACCCGCCCCAAGCATGAGGGACGTCCCAAAGCTCTCCCCGGTAGTGGCCCACCGCGTACACTCGGAACCTCTCTCGGGCTTAGTTTTCACTCAAGAATCTGTCCTCACTGCGTGTAGAGACGGGCACGTGAAGATTTGGGCGAGGCCTGGGCACTCAGATGGTCAGGCAAGCAACACCGAAGCCCTTTTGGGTACGAATGTTGTTGGGAAGGAGAAAAGTTCATTGCCGAGCAAACTTGGTGGTACTACTAGTTACAAATGA

Network for GWHGAAZE000887

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	202	230	0.00058
PF00400.33	WD40	247	272	0.0038

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	58.576
	SRR3591706	second leaf	40.293
	SRR3591707	mature leaf	60.662
	SRR3591708	Shoot apex	52.501
	SRR3591709	Stem	65.539
	SRR3591710	White floral bud	89.337
	SRR3591711	White flower	93.086
	SRR3591712	Green floral bud	67.912
	SRR3591713	Yellow flower	101.953
SRP173429	SRR8316895	Juvenile bud stage	47.171
	SRR8316896	Juvenile bud stage	62.480
	SRR8316897	Juvenile bud stage	25.507
	SRR8316894	Third green stage	23.253
	SRR8316900	Third green stage	78.610
	SRR8316901	Third green stage	78.001
	SRR8316898	Complete white stage	50.346
	SRR8316899	Complete white stage	127.420
	SRR8316903	Complete white stage	78.037
	SRR8316902	Silver flowering stage	41.379
	SRR8316904	Silver flowering stage	50.087
	SRR8316905	Silver flowering stage	24.308
	SRR8316906	Gold flowering stage	95.751
	SRR8316907	Gold flowering stage	99.585
	SRR8316908	Gold flowering stage	111.192
SRP132670	SRR6706286	Control	65.446
	SRR6706287	Light intensity 50%	72.121
	SRR6706288	Light intensity 20%	72.115
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	50.581
	CNS0095593	Slightly white alabastrum(diploid) 2	53.108
	CNS0095594	Slightly white alabastrum(diploid) 3	48.800
	CNS0095595	Whole white alabastrum(diploid) 2	42.843
	CNS0095596	Whole white alabastrum(diploid) 3	43.035
	CNS0095597	Whole white alabastrum(diploid) 4	40.353
	CNS0095598	Silvery flower (diploied) 1	57.586
	CNS0095599	Silvery flower (diploied) 2	52.312
	CNS0095600	Silvery flower (diploied) 3	91.593
	CNS0095601	Golden flower (diploid) 1	56.042
	CNS0095602	Golden flower (diploid) 2	84.292
	CNS0095603	Golden flower (diploid) 3	86.243
	CNS0095604	Slightly white alabastrum(tetraploid) 1	55.385
	CNS0095605	Slightly white alabastrum(tetraploid) 2	47.182
	CNS0095606	Slightly white alabastrum(tetraploid) 3	95.891
	CNS0095607	Whole white alabastrum(tetraploid) 1	40.339
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.248
	CNS0095609	Whole white alabastrum(tetraploid) 3	62.733
	CNS0095610	Silvery flower (tetraploid) 1	114.567
	CNS0095611	Silvery flower (tetraploid) 2	95.122
	CNS0095612	Silvery flower (tetraploid) 3	124.111
	CNS0095613	Golden flower (tetraploid) 1	76.492
	CNS0095614	Golden flower (tetraploid) 2	102.478
	CNS0095615	Golden flower (tetraploid) 3	96.929
CRA001975	CRR073297	Stem 1	66.399
	CRR073298	Stem 2	65.639
	CRR073299	Stem 3	68.518
	CRR073300	Leaf 1	81.810
	CRR073301	Leaf 2	69.415
	CRR073302	Leaf 3	63.277
	CRR073303	Juvenile bud 1	82.311
	CRR073304	Juvenile bud 2	78.856
	CRR073305	Juvenile bud 3	95.966
	CRR073306	Third green 1	69.204
	CRR073307	Third green 2	53.860
	CRR073308	Third green 3	61.928
	CRR073309	Second white 1	71.665
	CRR073310	Second white 2	76.676
	CRR073311	Second white 3	74.599
	CRR073312	Silver flowering 1	74.081
	CRR073313	Silver flowering 2	72.449
	CRR073314	Silver flowering 3	77.139
	CRR073315	Gold flowering 1	45.304
	CRR073316	Gold flowering 2	64.383
	CRR073317	Gold flowering 3	38.643
	CRR073318	Tawny withering 1	52.726
	CRR073319	Tawny withering 2	67.067
	CRR073320	Tawny withering 3	57.239