Detail information of GWHGAAZE000894


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAAS92257.11.9604E-137putative pyridoxine biosynthesis protein [Nicotiana tabacum]
Swissprottr|Q8LAD0|PDX2_ARATH3E-123Pyridoxal biosynthesis protein PDX2
trEMBLtr|Q6QND2|Q6QND2_TOBAC7E-138Putative pyridoxine biosynthesis protein {ECO:0000313|EMBL:AAS92257.1}
TAIR10AT5G60540.12E-98pyridoxine biosynthesis 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1900795319012384-
GWHAAZE00000001mRNA1900795319012384-
GWHAAZE00000001exon1901233319012384-
GWHAAZE00000001exon1901211519012229-
GWHAAZE00000001exon1901135219011370-
GWHAAZE00000001exon1901115519011242-
GWHAAZE00000001exon1901094019011013-
GWHAAZE00000001exon1901000819010199-
GWHAAZE00000001exon1900923419009331-
GWHAAZE00000001exon1900902919009162-
GWHAAZE00000001exon1900795319008373-
GWHAAZE00000001CDS1901233319012384-
GWHAAZE00000001CDS1901211519012229-
GWHAAZE00000001CDS1901135219011370-
GWHAAZE00000001CDS1901115519011242-
GWHAAZE00000001CDS1901094019011013-
GWHAAZE00000001CDS1901000819010199-
GWHAAZE00000001CDS1900923419009331-
GWHAAZE00000001CDS1900903919009162-
GWHAAZE00000001three_prime_UTR1900902919009038-
GWHAAZE00000001three_prime_UTR1900795319008373-
Transcript Sequence

Network for GWHGAAZE000894

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01174.20SNO52221.50E-48
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08681pdxT, pdx2 Vitamin B6 metabolism map00750

Gene Ontology

GO term OntologyName
GO:0042819biological_processvitamin B6 biosynthetic process
GO:0042823biological_processpyridoxal phosphate biosynthetic process
GO:0004359molecular_functionglutaminase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.078
SRR3591706second leaf8.596
SRR3591707mature leaf10.240
SRR3591708Shoot apex8.592
SRR3591709Stem2.569
SRR3591710White floral bud4.920
SRR3591711White flower11.310
SRR3591712Green floral bud9.760
SRR3591713Yellow flower13.986
SRP173429 SRR8316895Juvenile bud stage 5.748
SRR8316896Juvenile bud stage 9.847
SRR8316897Juvenile bud stage 3.145
SRR8316894Third green stage 4.409
SRR8316900Third green stage 18.273
SRR8316901Third green stage 18.490
SRR8316898Complete white stage 5.585
SRR8316899Complete white stage 13.272
SRR8316903Complete white stage 6.310
SRR8316902Silver flowering stage9.025
SRR8316904Silver flowering stage9.622
SRR8316905Silver flowering stage5.973
SRR8316906Gold flowering stage 22.027
SRR8316907Gold flowering stage 21.242
SRR8316908Gold flowering stage 24.832
SRP132670SRR6706286Control15.750
SRR6706287Light intensity 50%13.829
SRR6706288Light intensity 20%17.010
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.996
CNS0095593Slightly white alabastrum(diploid) 211.738
CNS0095594Slightly white alabastrum(diploid) 310.535
CNS0095595Whole white alabastrum(diploid) 29.684
CNS0095596Whole white alabastrum(diploid) 313.989
CNS0095597Whole white alabastrum(diploid) 410.981
CNS0095598Silvery flower (diploied) 16.921
CNS0095599Silvery flower (diploied) 26.557
CNS0095600Silvery flower (diploied) 38.756
CNS0095601Golden flower (diploid) 19.408
CNS0095602Golden flower (diploid) 29.322
CNS0095603Golden flower (diploid) 39.857
CNS0095604Slightly white alabastrum(tetraploid) 19.590
CNS0095605Slightly white alabastrum(tetraploid) 29.027
CNS0095606Slightly white alabastrum(tetraploid) 312.595
CNS0095607Whole white alabastrum(tetraploid) 15.384
CNS0095608Whole white alabastrum(tetraploid) 27.316
CNS0095609Whole white alabastrum(tetraploid) 317.531
CNS0095610Silvery flower (tetraploid) 117.900
CNS0095611Silvery flower (tetraploid) 215.269
CNS0095612Silvery flower (tetraploid) 37.083
CNS0095613Golden flower (tetraploid) 112.920
CNS0095614Golden flower (tetraploid) 216.827
CNS0095615Golden flower (tetraploid) 37.336
CRA001975CRR073297Stem 110.227
CRR073298Stem 213.404
CRR073299Stem 312.857
CRR073300Leaf 117.547
CRR073301Leaf 219.504
CRR073302Leaf 317.312
CRR073303Juvenile bud 116.978
CRR073304Juvenile bud 211.447
CRR073305Juvenile bud 311.749
CRR073306Third green 11.300
CRR073307Third green 21.916
CRR073308Third green 31.748
CRR073309Second white 11.724
CRR073310Second white 23.671
CRR073311Second white 31.973
CRR073312Silver flowering 11.073
CRR073313Silver flowering 21.333
CRR073314Silver flowering 32.223
CRR073315Gold flowering 145.249
CRR073316Gold flowering 243.973
CRR073317Gold flowering 331.068
CRR073318Tawny withering 16.036
CRR073319Tawny withering 27.304
CRR073320Tawny withering 37.533