Gene detail

Detail information of GWHGAAZE000904

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010651159.1	1.3122E-178	PREDICTED: probable serine/threonine-protein kinase NAK [Vitis vinifera]
Swissprot	tr\|Q9LK35\|THE1_ARATH	2E-57	Receptor-like protein kinase THESEUS 1 (Precursor)
trEMBL	tr\|D7SKY3\|D7SKY3_VITVI	5E-179	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI16311.3}
TAIR10	AT3G26700.1	5E-71	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	19199739	19204633	-
GWHAAZE00000001	mRNA	19199739	19204633	-
GWHAAZE00000001	exon	19199739	19199978	-
GWHAAZE00000001	exon	19200405	19200537	-
GWHAAZE00000001	exon	19200639	19200816	-
GWHAAZE00000001	exon	19201101	19201172	-
GWHAAZE00000001	exon	19201264	19201390	-
GWHAAZE00000001	exon	19201895	19202151	-
GWHAAZE00000001	exon	19202541	19202782	-
GWHAAZE00000001	exon	19204551	19204633	-
GWHAAZE00000001	CDS	19204551	19204633	-
GWHAAZE00000001	CDS	19202541	19202782	-
GWHAAZE00000001	CDS	19201895	19202151	-
GWHAAZE00000001	CDS	19201264	19201390	-
GWHAAZE00000001	CDS	19201101	19201172	-
GWHAAZE00000001	CDS	19200639	19200816	-
GWHAAZE00000001	CDS	19200405	19200537	-
GWHAAZE00000001	CDS	19199739	19199978	-

Transcript Sequence
>GWHTAAZE000906 ATGTCGCTGAAGCTGTACTTGCTTTCAAGAGCACAGTTGGAAGTTCTCGGCAATTTGTTAGTAGGATTGGGAAATCTCAATGTGTCCAGAAGAACAAGAATAGCGGCAACAGTTGATGGAGATACGGGCGTTCCAACGCTTACACCTGCTCAAGTGGTTGAGGTTAAGAAGCCAAATAAACAGAAGTTAGCTGCTATTATTGGCGGCGTTGTTGCAGCTTTGCTTGTGGTCATAATCGGAGTACTTGTATATTTCTGCTTGATGCGTTTTAAAAGATTCATACGGAGATCATCTGATTCAGCATCCTCTGTTCCATCACCTCCTGTGACGTGTTTGTTTCTTTCAGTTGAGCAGGAAATAGGGTATATTAACCCTGGTTCTAGTTATCTCTCTGCATGTAACGAACAGACTCCAAGGCAATTAACAATTTCAGAGCTGGAGCATGCTACTGGCTGTTTCAGTCAGAGTAAGATTATAGGAGAAGGTGGATTTGGTTTAGTTTACCAAGGTTTACTTGAAGATGGATCTATTGTAGCCATTAAGAGACGCTTTCGCTTCCCAATTCACTACTTTCTTCAAGAGGTAAAGCACATAGCTGGTGTACGCCATAAGCATCTTGTGAAGCTTCTTGGATATTGTGAAGAATCCAGTGAACAGTTTCTTGTGTATGAGTATCTTCCAAATGGAAATGTTGGGAATCATCTCTATGATAGTGAAGGTTTACCTATCGGAAAGCTAGAAATGCGGCAAAGGTTATCGATTGCTTTGGGTGCGGCAAAAGGACTAGAGCATCTTCACAGTTTGGTGCCTCCTGTGTTGCACACGCGCTTCAAAACGAGGAACGTTCTTGTGGATGAAAATTTTGTCGCCAAGGTTTCTGATTTTGGGCTTTCGAAATTGGTGCCGGAGGCTAATCATGCTGGTTCATCTTCGGCATTTGACTGCTTTCTTGACCCCGAGTTAAGATCGTTCAAAGATGTCAAGGAGAGAAGTGATGTCTTTAGTTTTGGTGTCTTCTTATTAGAGTTAATTAGTGGAAAAGATGCAAATGACTGGAGCCAATCGGACGTGCAAGAAAATCTAGTATTACAGGCCAAGACCTCCAATCTCGAAAATTTGGTCGACAAGAAGGCGAAGGACCACTTGATTGACGCTGTGAAAAAGATGATGGAGTTGGCATTATTATGTATAGATATTGGTGAAAGAAGGCCATCAATGAACAACATTGTTCAAGAACTAGAAAAGATTCAGGAGAGGGAAATTGGTCATCTTCATTCTCATCTAAATGAGGATATTGGAATGGTTACTCTAGGAAGCGAGCTCTTCAAATAA

Network for GWHGAAZE000904

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	155	413	3.40E-36

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-IXa

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.265
	SRR3591706	second leaf	6.887
	SRR3591707	mature leaf	1.410
	SRR3591708	Shoot apex	12.439
	SRR3591709	Stem	19.131
	SRR3591710	White floral bud	7.345
	SRR3591711	White flower	5.093
	SRR3591712	Green floral bud	10.353
	SRR3591713	Yellow flower	3.756
SRP173429	SRR8316895	Juvenile bud stage	12.512
	SRR8316896	Juvenile bud stage	18.455
	SRR8316897	Juvenile bud stage	5.529
	SRR8316894	Third green stage	8.894
	SRR8316900	Third green stage	13.285
	SRR8316901	Third green stage	16.093
	SRR8316898	Complete white stage	2.633
	SRR8316899	Complete white stage	18.574
	SRR8316903	Complete white stage	3.319
	SRR8316902	Silver flowering stage	1.723
	SRR8316904	Silver flowering stage	2.298
	SRR8316905	Silver flowering stage	0.809
	SRR8316906	Gold flowering stage	2.996
	SRR8316907	Gold flowering stage	3.286
	SRR8316908	Gold flowering stage	3.023
SRP132670	SRR6706286	Control	11.315
	SRR6706287	Light intensity 50%	12.638
	SRR6706288	Light intensity 20%	13.750
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.294
	CNS0095593	Slightly white alabastrum(diploid) 2	12.283
	CNS0095594	Slightly white alabastrum(diploid) 3	14.356
	CNS0095595	Whole white alabastrum(diploid) 2	7.675
	CNS0095596	Whole white alabastrum(diploid) 3	8.218
	CNS0095597	Whole white alabastrum(diploid) 4	6.824
	CNS0095598	Silvery flower (diploied) 1	8.556
	CNS0095599	Silvery flower (diploied) 2	5.028
	CNS0095600	Silvery flower (diploied) 3	2.904
	CNS0095601	Golden flower (diploid) 1	5.180
	CNS0095602	Golden flower (diploid) 2	3.541
	CNS0095603	Golden flower (diploid) 3	4.223
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.129
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.449
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.887
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.833
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.659
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.041
	CNS0095610	Silvery flower (tetraploid) 1	3.636
	CNS0095611	Silvery flower (tetraploid) 2	3.407
	CNS0095612	Silvery flower (tetraploid) 3	2.769
	CNS0095613	Golden flower (tetraploid) 1	0.596
	CNS0095614	Golden flower (tetraploid) 2	2.441
	CNS0095615	Golden flower (tetraploid) 3	0.478
CRA001975	CRR073297	Stem 1	12.419
	CRR073298	Stem 2	16.865
	CRR073299	Stem 3	5.713
	CRR073300	Leaf 1	12.560
	CRR073301	Leaf 2	12.141
	CRR073302	Leaf 3	8.501
	CRR073303	Juvenile bud 1	4.631
	CRR073304	Juvenile bud 2	2.577
	CRR073305	Juvenile bud 3	4.546
	CRR073306	Third green 1	2.269
	CRR073307	Third green 2	2.383
	CRR073308	Third green 3	5.074
	CRR073309	Second white 1	0.142
	CRR073310	Second white 2	1.615
	CRR073311	Second white 3	0.302
	CRR073312	Silver flowering 1	0.793
	CRR073313	Silver flowering 2	0.064
	CRR073314	Silver flowering 3	0.228
	CRR073315	Gold flowering 1	3.665
	CRR073316	Gold flowering 2	4.094
	CRR073317	Gold flowering 3	1.370
	CRR073318	Tawny withering 1	5.102
	CRR073319	Tawny withering 2	4.269
	CRR073320	Tawny withering 3	4.017