Gene detail

Detail information of GWHGAAZE000910

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010651163.1	3.1357E-153	PREDICTED: homeobox-leucine zipper protein REVOLUTA [Vitis vinifera]
Swissprot	tr\|Q9SE43\|REV_ARATH	5E-138	Homeobox-leucine zipper protein REVOLUTA
trEMBL	tr\|D7SKZ0\|D7SKZ0_VITVI	1E-153	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI16318.3}
TAIR10	AT5G60690.1	1E-117	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	19357407	19364159	+
GWHAAZE00000001	mRNA	19357407	19364159	+
GWHAAZE00000001	exon	19357407	19358138	+
GWHAAZE00000001	exon	19358230	19358258	+
GWHAAZE00000001	exon	19358418	19358575	+
GWHAAZE00000001	exon	19359146	19359231	+
GWHAAZE00000001	exon	19359339	19359429	+
GWHAAZE00000001	exon	19359574	19359639	+
GWHAAZE00000001	exon	19359780	19359922	+
GWHAAZE00000001	exon	19361498	19361569	+
GWHAAZE00000001	exon	19362506	19362590	+
GWHAAZE00000001	exon	19363303	19363490	+
GWHAAZE00000001	exon	19363816	19363918	+
GWHAAZE00000001	exon	19364022	19364159	+
GWHAAZE00000001	five_prime_UTR	19357407	19357905	+
GWHAAZE00000001	CDS	19357906	19358138	+
GWHAAZE00000001	CDS	19358230	19358258	+
GWHAAZE00000001	CDS	19358418	19358575	+
GWHAAZE00000001	CDS	19359146	19359231	+
GWHAAZE00000001	CDS	19359339	19359429	+
GWHAAZE00000001	CDS	19359574	19359639	+
GWHAAZE00000001	CDS	19359780	19359922	+
GWHAAZE00000001	CDS	19361498	19361569	+
GWHAAZE00000001	CDS	19362506	19362590	+
GWHAAZE00000001	CDS	19363303	19363490	+
GWHAAZE00000001	CDS	19363816	19363918	+
GWHAAZE00000001	CDS	19364022	19364159	+

Transcript Sequence
>GWHTAAZE000912 TGTATCGGTTTGTTTGGTGGAAAAGTAGAGATTTGAGTGGAATCAGAGTTAGAAAGTGATTTCGTTGGAGAATCTGAGGGTTTAAGTTCGAAAACTTGAGAGATTGAAGGAACGAAGCTCGAGTTTGTTTGGACTTAGCTTCAAGGAACAAATAGGAGGTGTTTTTTTTTTTTTTTTTGAACCTTTTCATTTTGTGTATAAACATTTATTGAGGAATTTGGCTGTACCTTCAGTTTGAGGTTGGATTGAAGTGTGTATGTGTATCAAGTGTGAACCTTTACAATAAAAGACCACGAGAATATTCTGGCAAAATCAAGTTCGTCCGTTTAATATCACAAGATCGGACATTGTGAGGAGAATCTTAGTTCATTGATAAATCCCACTAGCTGTATAAGTCGGCCGCTCGCGGTTTTCGTATTTCTGTGGTATTCTTTTTCCCCTTTTTGTCGGCTTATTGGGCTTAACATTTTGGGGAAGATTTGATTTCTGAGCGGCAAAAATGGCAATGGCGGTGGCTCAACATCACAGAGAGAGTAGCAGTGGTAGTATTAGCAAGCATCTCGATAATGGAAAATATGTGAGGTACACATCTGAGCAGGTTGAAGCTTTGGAACGGGTTTATGCCGAATGCCCTAAGCCAAGTTCGTTACGCCGGCAGCAATTGATCCGCGAATGCCCTATTTTGTCTAACATCGAGCCCAAACAGATAAAAGTCTGGTTTCAGAATCGCAGACTTCCCTTTTTAGAACTTGTGGCATCTTGTCGAGAGAAGCAGCGAAAAGAGGCTTGTCAACTCCAGACCGTAAACAGAAAATTATCTGCAATGAACAAGTTGTTGATGGAGGAGAATGATCGCCTGCAGAAACAGGTCTCTCAGCTGGTATGCGAGAATGGGTACATGCGGCAACAATTGCATACTACACCAGCAGCAACTACTGATGGAAGCTGTGAGTCTGCGGTTACCACTCCTCAGCATTCTCTGAAAGACTCTAGTAACCCTGCTGGACTTCTCTCGATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGATTTCACATAGTTGCAGTGGAGTGGCAGCTAGAGCCTGCGGTCTTGTAAGTTTAGAGCCTACAAAGATTATGGAGATCCTTAAAGATCGGCCAACTTGGTTTCGTGATTGCCGGAGCCTTGAAGTTTTTACTATGTTTCCTGCTGGAAATGGAGGAACAATTGAACTTGTGTACACTCAGGTGAATGGAGCTTTTGATATTCCTCTGATGCATGGAGTGTCCCTGAGGTGCCGTCCGCTCTATGAATCATCCAAAGTGGTAGCACAGAAGATGACTATTAGAGGTTTTAATGATGCTATTAGTGGATTCAGTGATGATGGGTGGTCACTGATGAACTGTGATGTTGCTGAAGATGTGACAATTGCAAATGTCCCTCCTGCAGTGCTGGTTCGTTTTCTAAGGGAGCACCGATCTGAGTGGGCTGACTTTAATGTCGATGCCTATTCTGCTGCTTCTTTAAAAGCTAGCTCATACTCTTACCCAGGAATGAGGCCCACAAGGTTTACGGAAGCCAAATTATCATGCCACTTGGTCACACAATCGAACATGAAGAGCCTGTCTCCTCTTGCGTCACAGATGCTTGAAGTGGTTCGACTCGAAGGTCACTCATTTGGTCAAGAGGATGCTTTTATGTCAAGGGACATTCACCTCTTGCAGCTATCTAGTGGAATTGATGAAAATGCTGTAGGAGCCTGTGCAGAACTTATTTTTGCTGTCGATGAAATGTTTCGGATGGCTCCACTTCTACCCTCTGGGTTCGCATCATTCCATTGGATTCAAAATCAGTTGGGTTAA

Network for GWHGAAZE000910

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	25	78	1.30E-14
PF01852.20	START	173	259	1.50E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding
GO:0008289	molecular_function	lipid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.292
	SRR3591706	second leaf	3.314
	SRR3591707	mature leaf	1.237
	SRR3591708	Shoot apex	6.564
	SRR3591709	Stem	7.518
	SRR3591710	White floral bud	1.921
	SRR3591711	White flower	1.512
	SRR3591712	Green floral bud	1.849
	SRR3591713	Yellow flower	0.396
SRP173429	SRR8316895	Juvenile bud stage	1.365
	SRR8316896	Juvenile bud stage	1.646
	SRR8316897	Juvenile bud stage	0.667
	SRR8316894	Third green stage	0.826
	SRR8316900	Third green stage	0.885
	SRR8316901	Third green stage	0.722
	SRR8316898	Complete white stage	0.074
	SRR8316899	Complete white stage	1.584
	SRR8316903	Complete white stage	0.346
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.130
	SRR8316905	Silver flowering stage	0.073
	SRR8316906	Gold flowering stage	0.112
	SRR8316907	Gold flowering stage	0.074
	SRR8316908	Gold flowering stage	0.143
SRP132670	SRR6706286	Control	0.966
	SRR6706287	Light intensity 50%	1.163
	SRR6706288	Light intensity 20%	1.229
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.633
	CNS0095593	Slightly white alabastrum(diploid) 2	0.997
	CNS0095594	Slightly white alabastrum(diploid) 3	1.073
	CNS0095595	Whole white alabastrum(diploid) 2	0.450
	CNS0095596	Whole white alabastrum(diploid) 3	0.333
	CNS0095597	Whole white alabastrum(diploid) 4	0.274
	CNS0095598	Silvery flower (diploied) 1	1.738
	CNS0095599	Silvery flower (diploied) 2	1.138
	CNS0095600	Silvery flower (diploied) 3	0.845
	CNS0095601	Golden flower (diploid) 1	0.593
	CNS0095602	Golden flower (diploid) 2	0.957
	CNS0095603	Golden flower (diploid) 3	1.536
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.027
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.419
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.077
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.620
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.398
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.672
	CNS0095610	Silvery flower (tetraploid) 1	1.022
	CNS0095611	Silvery flower (tetraploid) 2	1.096
	CNS0095612	Silvery flower (tetraploid) 3	0.623
	CNS0095613	Golden flower (tetraploid) 1	0.274
	CNS0095614	Golden flower (tetraploid) 2	0.555
	CNS0095615	Golden flower (tetraploid) 3	0.105
CRA001975	CRR073297	Stem 1	3.748
	CRR073298	Stem 2	3.104
	CRR073299	Stem 3	3.219
	CRR073300	Leaf 1	0.941
	CRR073301	Leaf 2	1.410
	CRR073302	Leaf 3	0.528
	CRR073303	Juvenile bud 1	0.493
	CRR073304	Juvenile bud 2	0.153
	CRR073305	Juvenile bud 3	1.194
	CRR073306	Third green 1	0.033
	CRR073307	Third green 2	0.068
	CRR073308	Third green 3	0.039
	CRR073309	Second white 1	0.009
	CRR073310	Second white 2	0.048
	CRR073311	Second white 3	0.042
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.037
	CRR073315	Gold flowering 1	0.378
	CRR073316	Gold flowering 2	0.212
	CRR073317	Gold flowering 3	0.971
	CRR073318	Tawny withering 1	6.607
	CRR073319	Tawny withering 2	2.822
	CRR073320	Tawny withering 3	6.588