Gene detail

Detail information of GWHGAAZE000914

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006347195.1	PREDICTED: cell division cycle protein 48 homolog [Solanum tuberosum]
Swissprot	tr\|Q96372\|CDC48_CAPAN	Cell division cycle protein 48 homolog
trEMBL	tr\|M1AVI1\|M1AVI1_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400031321}
TAIR10	AT5G03340.1	ATPase, AAA-type, CDC48 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	19436812	19443572	+
GWHAAZE00000001	mRNA	19436812	19443572	+
GWHAAZE00000001	exon	19436812	19436840	+
GWHAAZE00000001	exon	19436980	19437145	+
GWHAAZE00000001	exon	19438179	19438407	+
GWHAAZE00000001	exon	19439123	19439889	+
GWHAAZE00000001	exon	19440444	19440665	+
GWHAAZE00000001	exon	19440968	19441039	+
GWHAAZE00000001	exon	19441204	19441485	+
GWHAAZE00000001	exon	19442072	19442431	+
GWHAAZE00000001	exon	19443285	19443572	+
GWHAAZE00000001	CDS	19436812	19436840	+
GWHAAZE00000001	CDS	19436980	19437145	+
GWHAAZE00000001	CDS	19438179	19438407	+
GWHAAZE00000001	CDS	19439123	19439889	+
GWHAAZE00000001	CDS	19440444	19440665	+
GWHAAZE00000001	CDS	19440968	19441039	+
GWHAAZE00000001	CDS	19441204	19441485	+
GWHAAZE00000001	CDS	19442072	19442431	+
GWHAAZE00000001	CDS	19443285	19443572	+

Transcript Sequence
>GWHTAAZE000916 ATGAGCAACCAAGCTGAATCTTCCGACTCGAAAGGATCCAAAAAGGACTTCTCCACTGCAATATTAGAGCGGAAAAAGTCGCCGAATCGGCTCGTTGTAGATGAGGCAGTCAATGACGACAACAGTGTTGTTGCGATGCACCCTACTACCATGGAAAAGTTGCAGCTTTTCCGTGGCGATACTATTTTGATCAAGGGCAAAAAAAGGAAAGACACTGTTTGCATAGCTCTTGCTGACGAGACATGTGATGAGCCCAAGATCAGAATGAATAAGGTTGTGAGGACGAATCTAAGGGTTCGTCTTGGAGATGTTGTATCTGTGCACCAATGCCCAGATGTGAAGTATGGAAAGAGGGTCCATATCCTTCCCTTGGATGATACCATAGAAGGTGTTACTGGGGATTTATTTGATGCCTACTTGAAACCTTACTTTTTGGAGGCATATCGCCCAGTGAGGAAAGGAGACCATTTCCTTGTTAGAGGAGGGATGAGGAGCGTAGAATTCAAGGTAATTGAGACCGAGCCAGGTGAGTACTGCGTTGTTGCTCCAGATACCGAAGTCTTTTGCGAGGGGGAGCCCATTAGAAGGGATGAAGAGGATCGCTTGGACGAGATTGGATATGATGATGTGGGTGGTGTAAGAAAACAGATGGCGCAAATCCGTGAGTTGGTTGAGTTGCCCTTAAGGCACCCCCAACTTTTCAAATCTATCGGGGTGAAACCACCGAAAGGAATTTTACTCTATGGACCGCCCGGATCTGGAAAGACCTTAATAGCTAGGGCTGTCGCCAATGAAACTGGTGCTTTTTTCTTTTGCATTAATGGACCTGAAATTATGTCCAAATTGGCTGGTGAAAGTGAAAGCAATCTCAGAAAGGCATTTGAAGAGGCTGAGAAAAATGCACCGTCAATCATTTTTATTGACGAGATTGATTCAATTGCTCCAAAGAGAGAGAAGACGAATGGTGAAGTTGAAAGGAGGATTGTTTCGCAACTCTTGACTCTTATGGATGGACTGAAATCTCGGGCCCACGTTATTGTAATGGGGGCTACGAATCGCCCAAACAGCATTGACCCGGCTTTGAGAAGGTTTGGTAGGTTTGATAGGGAAATAGATATTGGTGTTCCCGATGAAGTTGGACGTCTTGAAGTTCTTCGCATTCATACCAAAAATATGAAACTCTCTGAAGATGTTGATCTTGAAAGGATATCAAAAGACACCCATGGTTATGTTGGTGCCGACCTTGCTGCTCTCTGCACCGAAGCTGCACTTCAGTGCATCAGAGAGAAGATGGATGTCATCGATTTGGAGGATGAAACTATTGATGCGGAGATACTAAATTCAATGGCTGTAACAAACGAACATTTCCATACTGCTCTTGGGACAAGCAACCCATCTGCTCTGCGAGAGACTGTTGTTGAAGTGCCCAACTGCAGTTGGGAGGACATTGGAGGCCTTGAAAATGTCAAGCGGGAGCTTCAAGAGACTGTTCAATACCCTGTGGAGCACCCAGAGAAGTTTGAAAAGTTCGGTATGTCACCTTCAAAGGGGGTTCTTTTCTATGGCCCCCCTGGATGTGGAAAAACCCTATTGGCCAAGGCGATTGCTAATGAATGCCAAGCCAACTTCATCAGTATTAAAGGACCTGAACTGCTTACCATGTGGTTTGGTGAAAGTGAAGCCAATGTTCGTGAGATTTTTGACAAGGCCAGGCAATCTGCACCATGTGTCCTCTTCTTTGATGAGCTCGATTCCATTGCGACACAGAGGGGAAGCAGTAGTGGAGATGCTGGTGGTGCAGCCGATAGGGTTCTGAACCAGCTTTTGACCGAAATGGACGGCATGTCAGCAAAGAAGACAGTTTTCATAATTGGGGCCACTAACCGACCTGACATAATTGACCCCGCACTCTTACGACCGGGCCGTCTTGATCAGTTAATATACATTCCGCTTCCCGATGAAGAGTCCCGTCTTCAGATTTTCAAGGCCTGCATGAGGAAATCGCCCGTCTCTAAGGATGTTGACTTGAGGGCTCTTGCCAAGTACACCCAAGGATTTAGCGGGGCTGATATTACCGAGATTTGCCAACGTGCCTGCAAGTATGCTATCAGAGAGAATATTGAGAAAGACATAGAGAAGGAGAAGAAGAGGGCTGAGAATCCGGACTCGATGGAAGAGGATGAGGAAGAGGTGGCAGAGATTAAGGCTGCCCATTTTGAGGAATCCATGAAGTACGCTCGTAGAAGCGTGAGTGATTCCGATATACGCAAGTACCAAGCCTTTGCACAGACCCTTCAGCAGTCGCGAGGGTTCGGAACTGAATTCCGCTTCGCTGAATCTGGATCTGCAGCGGCTGCATCTGACCCGTTTGCGGCTTCTGCTGGTGGGGCCGATGAAGATGACTTGTATAATTAA

Network for GWHGAAZE000914

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0129

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02359.19	CDC48_N	30	111	4.90E-23
PF02933.18	CDC48_2	132	194	3.40E-11
PF00004.30	AAA	245	374	1.70E-47
PF17862.2	AAA_lid_3	397	439	6.60E-14
PF00004.30	AAA	518	651	8.70E-48
PF17862.2	AAA_lid_3	673	714	1.40E-13
PF09336.11	Vps4_C	724	763	0.0002

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13525	VCP, CDC48	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	82.026
	SRR3591706	second leaf	53.807
	SRR3591707	mature leaf	47.893
	SRR3591708	Shoot apex	79.492
	SRR3591709	Stem	83.399
	SRR3591710	White floral bud	85.264
	SRR3591711	White flower	102.845
	SRR3591712	Green floral bud	90.780
	SRR3591713	Yellow flower	80.988
SRP173429	SRR8316895	Juvenile bud stage	49.903
	SRR8316896	Juvenile bud stage	68.235
	SRR8316897	Juvenile bud stage	31.042
	SRR8316894	Third green stage	27.063
	SRR8316900	Third green stage	89.103
	SRR8316901	Third green stage	82.317
	SRR8316898	Complete white stage	38.451
	SRR8316899	Complete white stage	98.702
	SRR8316903	Complete white stage	59.602
	SRR8316902	Silver flowering stage	39.508
	SRR8316904	Silver flowering stage	50.974
	SRR8316905	Silver flowering stage	24.708
	SRR8316906	Gold flowering stage	97.791
	SRR8316907	Gold flowering stage	97.964
	SRR8316908	Gold flowering stage	104.900
SRP132670	SRR6706286	Control	102.776
	SRR6706287	Light intensity 50%	101.423
	SRR6706288	Light intensity 20%	106.409
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	55.664
	CNS0095593	Slightly white alabastrum(diploid) 2	58.016
	CNS0095594	Slightly white alabastrum(diploid) 3	51.358
	CNS0095595	Whole white alabastrum(diploid) 2	50.621
	CNS0095596	Whole white alabastrum(diploid) 3	52.011
	CNS0095597	Whole white alabastrum(diploid) 4	51.122
	CNS0095598	Silvery flower (diploied) 1	52.577
	CNS0095599	Silvery flower (diploied) 2	53.971
	CNS0095600	Silvery flower (diploied) 3	93.821
	CNS0095601	Golden flower (diploid) 1	48.002
	CNS0095602	Golden flower (diploid) 2	87.505
	CNS0095603	Golden flower (diploid) 3	84.289
	CNS0095604	Slightly white alabastrum(tetraploid) 1	49.479
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.556
	CNS0095606	Slightly white alabastrum(tetraploid) 3	86.384
	CNS0095607	Whole white alabastrum(tetraploid) 1	36.964
	CNS0095608	Whole white alabastrum(tetraploid) 2	32.071
	CNS0095609	Whole white alabastrum(tetraploid) 3	68.298
	CNS0095610	Silvery flower (tetraploid) 1	77.970
	CNS0095611	Silvery flower (tetraploid) 2	65.898
	CNS0095612	Silvery flower (tetraploid) 3	56.135
	CNS0095613	Golden flower (tetraploid) 1	41.330
	CNS0095614	Golden flower (tetraploid) 2	66.899
	CNS0095615	Golden flower (tetraploid) 3	54.213
CRA001975	CRR073297	Stem 1	98.812
	CRR073298	Stem 2	92.084
	CRR073299	Stem 3	117.165
	CRR073300	Leaf 1	111.349
	CRR073301	Leaf 2	111.106
	CRR073302	Leaf 3	108.495
	CRR073303	Juvenile bud 1	131.721
	CRR073304	Juvenile bud 2	120.953
	CRR073305	Juvenile bud 3	150.435
	CRR073306	Third green 1	82.871
	CRR073307	Third green 2	62.372
	CRR073308	Third green 3	75.079
	CRR073309	Second white 1	96.257
	CRR073310	Second white 2	78.994
	CRR073311	Second white 3	74.235
	CRR073312	Silver flowering 1	90.434
	CRR073313	Silver flowering 2	112.262
	CRR073314	Silver flowering 3	90.820
	CRR073315	Gold flowering 1	84.275
	CRR073316	Gold flowering 2	110.690
	CRR073317	Gold flowering 3	104.662
	CRR073318	Tawny withering 1	116.311
	CRR073319	Tawny withering 2	94.594
	CRR073320	Tawny withering 3	104.882