Gene detail

Detail information of GWHGAAZE000927

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008384388.1	PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase gpi3 subunit-like [Malus domestica]
trEMBL	tr\|M5VY58\|M5VY58_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ06392.1}
TAIR10	AT3G45100.2	UDP-Glycosyltransferase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	19827953	19834637	+
GWHAAZE00000001	mRNA	19827953	19834637	+
GWHAAZE00000001	exon	19827953	19828207	+
GWHAAZE00000001	exon	19829418	19829623	+
GWHAAZE00000001	exon	19829892	19830464	+
GWHAAZE00000001	exon	19831030	19831184	+
GWHAAZE00000001	exon	19832568	19832658	+
GWHAAZE00000001	exon	19832803	19832919	+
GWHAAZE00000001	exon	19833271	19833374	+
GWHAAZE00000001	exon	19834347	19834437	+
GWHAAZE00000001	exon	19834551	19834637	+
GWHAAZE00000001	five_prime_UTR	19827953	19828207	+
GWHAAZE00000001	five_prime_UTR	19829418	19829503	+
GWHAAZE00000001	CDS	19829504	19829623	+
GWHAAZE00000001	CDS	19829892	19830464	+
GWHAAZE00000001	CDS	19831030	19831184	+
GWHAAZE00000001	CDS	19832568	19832658	+
GWHAAZE00000001	CDS	19832803	19832919	+
GWHAAZE00000001	CDS	19833271	19833374	+
GWHAAZE00000001	CDS	19834347	19834437	+
GWHAAZE00000001	CDS	19834551	19834637	+

Transcript Sequence
>GWHTAAZE000929 TTTCTTATAAAAACCTCTCAGTTAATTAGATGAAATTAACGAGAGGTGAGGTCTCTATCTTTGCCAAAACTAAACTATCTCTAACCCAATTTCACTCCGTCACATTTTTCTCTGTGATTTCATCGCCCATATCATATATAATATATATACACACTTCACTCTTTCAATTCAAGAAACAGAATGATTGAATACCGCTCTCAATTGGGCTATTATTGAAGATTTGCTTCACCTGATCGAGCTAAAACCAAACACCAATACTCCTTGGTGTTTTGTGGATGAATAGACTTTCCCCAAACAGAACATTTATCTTTACTCACAGGTGTTGAGTTACCAGAATTATAATGACGGAGCAGAGAAGACATAGAATTTTGATGGTGTCCGATTTTTTTTATCCTAACTTTGGTGGTGTCGAGAATCACATTTATTATCTATCGCAATGCTTGCTTAAGCTTGGCCATAAGGTGGTGGTTATGACTCATGCATACGGGAATCGTTCCGGGGTTCGGTATATGACTGGCGGTCTTAAAGTCTACTATATACCTTGGAAACCATTTCTTATGCAAAACACATTGCCCACATTTTATGGTACACTTTCCATTATAAGGACAATTCTCATCCGAGAAAAAATATCATTAATACACGGACATCAAGCATTCTCAACTCTTTGTCACGAGGCTCTTATGCATGGACGCACTATGGGATATAAAGTTGTATTTACTGATCATTCGCTCTATGGTTTTGCTGATGCGGGTAGCATTCACATGAACAAGGTGTTACAATTTACTTTAGCAGATGTTACCAAGGCCATTTGTGTTTCTCATACGAGTAAGGAAAATACAGTTCTAAGGTCGGGCTTGCCGCCCGAAAAGGTGTTTGTTATTCCAAACGCTGTGGACACGGCTATGTTCAAGCCTGCTCCACAGAAACTCGGAAGTGATGAGATTATCATAGTGGTGATAAGTAGATTGGTCTATCGGAAAGGTGCAGATTTGCTAGTTGAGATTATCCCCGAAGTATGCCGGTTGTATCCCAATGTTCGTTTCATTGTTGGAGGAGATGGGCCTAAAAGAGTGAGGCTGGAAGAGATGAGGGAAAAGCACTCCCTTCAGGACCGAGTTGATATGCTAGGTGCTGTACCTCATGCTAAAGTACGTTCAGTCTTGATTTCTGGCCACATATTCTTAAATAGTTCCTTAACGGAAGCATTTTGCATAGCCATATTGGAGGCCGCTAGCTGTGGATTACTGACAGTCAGCACGCGTGTGGGAGGTGTCCCTGAGGTCCTGCCAGATGATATGGTTGTCCTTGCGAAGCCAGACCCTAGTGATATGGTACAAGCAATAGAGAAAGCAATACGTATACTTCCCCAAATAGATCCACAAGCTATGCACCTTCGTATGAAAAAACTGTACAGTTGGCATGATGTTGCAAAACGAACTGAGATTGTGTATGACCGTGCTTTGAGATGTTCAAATCAAGATCTCTTAGAACGTCTTTCGAGGTACCTCACATGTGGTGCTTGGGCAGGAAAGCTTTTCTGCTTTGTTATGATTATTGATTTTTTGTTATGGCGTCTATTACAACTGTGGCAGCCTGACGTGGATATTGAGGTGGTACCTGATATAATGCATTTTCGACATGGAGATCCACCGGAAGATTTCAACAAGGACAATTCTTAA

Network for GWHGAAZE000927

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08288.13	PIGA	46	135	6.70E-41
PF00534.21	Glycos_transf_1	194	338	1.20E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03857	PIGA, GPI3	Metabolic pathways	map01100
K03857	PIGA, GPI3	Glycosylphosphatidylinositol	map00563

Gene Ontology

GO term	Ontology	Name
GO:0006506	biological_process	GPI anchor biosynthetic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.962
	SRR3591706	second leaf	3.447
	SRR3591707	mature leaf	3.409
	SRR3591708	Shoot apex	5.476
	SRR3591709	Stem	5.068
	SRR3591710	White floral bud	4.929
	SRR3591711	White flower	5.917
	SRR3591712	Green floral bud	5.559
	SRR3591713	Yellow flower	3.799
SRP173429	SRR8316895	Juvenile bud stage	4.901
	SRR8316896	Juvenile bud stage	5.199
	SRR8316897	Juvenile bud stage	2.296
	SRR8316894	Third green stage	2.969
	SRR8316900	Third green stage	8.638
	SRR8316901	Third green stage	7.501
	SRR8316898	Complete white stage	2.454
	SRR8316899	Complete white stage	9.337
	SRR8316903	Complete white stage	5.173
	SRR8316902	Silver flowering stage	2.212
	SRR8316904	Silver flowering stage	4.285
	SRR8316905	Silver flowering stage	1.877
	SRR8316906	Gold flowering stage	6.117
	SRR8316907	Gold flowering stage	5.394
	SRR8316908	Gold flowering stage	4.802
SRP132670	SRR6706286	Control	5.281
	SRR6706287	Light intensity 50%	4.996
	SRR6706288	Light intensity 20%	5.743
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.778
	CNS0095593	Slightly white alabastrum(diploid) 2	3.163
	CNS0095594	Slightly white alabastrum(diploid) 3	3.914
	CNS0095595	Whole white alabastrum(diploid) 2	4.539
	CNS0095596	Whole white alabastrum(diploid) 3	4.407
	CNS0095597	Whole white alabastrum(diploid) 4	3.899
	CNS0095598	Silvery flower (diploied) 1	5.441
	CNS0095599	Silvery flower (diploied) 2	3.329
	CNS0095600	Silvery flower (diploied) 3	7.101
	CNS0095601	Golden flower (diploid) 1	3.228
	CNS0095602	Golden flower (diploid) 2	6.145
	CNS0095603	Golden flower (diploid) 3	4.882
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.153
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.833
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.186
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.957
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.156
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.529
	CNS0095610	Silvery flower (tetraploid) 1	6.012
	CNS0095611	Silvery flower (tetraploid) 2	5.146
	CNS0095612	Silvery flower (tetraploid) 3	4.941
	CNS0095613	Golden flower (tetraploid) 1	1.643
	CNS0095614	Golden flower (tetraploid) 2	4.583
	CNS0095615	Golden flower (tetraploid) 3	2.840
CRA001975	CRR073297	Stem 1	6.453
	CRR073298	Stem 2	6.181
	CRR073299	Stem 3	5.209
	CRR073300	Leaf 1	6.646
	CRR073301	Leaf 2	6.410
	CRR073302	Leaf 3	4.580
	CRR073303	Juvenile bud 1	6.375
	CRR073304	Juvenile bud 2	4.555
	CRR073305	Juvenile bud 3	5.920
	CRR073306	Third green 1	1.345
	CRR073307	Third green 2	2.453
	CRR073308	Third green 3	1.741
	CRR073309	Second white 1	3.360
	CRR073310	Second white 2	2.602
	CRR073311	Second white 3	2.364
	CRR073312	Silver flowering 1	3.017
	CRR073313	Silver flowering 2	3.117
	CRR073314	Silver flowering 3	3.356
	CRR073315	Gold flowering 1	3.474
	CRR073316	Gold flowering 2	7.246
	CRR073317	Gold flowering 3	4.646
	CRR073318	Tawny withering 1	5.238
	CRR073319	Tawny withering 2	4.269
	CRR073320	Tawny withering 3	5.044