Gene detail

Detail information of GWHGAAZE000932

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009621603.1	2.291E-130	PREDICTED: alpha carbonic anhydrase 7 [Nicotiana tomentosiformis]
Swissprot	tr\|Q8L817\|ATCA7_ARATH	8E-118	Alpha carbonic anhydrase 7 (Precursor)
trEMBL	tr\|M1AEA2\|M1AEA2_SOLTU	1E-126	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400020910}
TAIR10	AT1G08080.1	1E-83	alpha carbonic anhydrase 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	19995731	19998136	+
GWHAAZE00000001	mRNA	19995731	19998136	+
GWHAAZE00000001	exon	19995731	19995946	+
GWHAAZE00000001	exon	19996685	19996791	+
GWHAAZE00000001	exon	19996931	19997033	+
GWHAAZE00000001	exon	19997222	19997389	+
GWHAAZE00000001	exon	19997887	19997940	+
GWHAAZE00000001	exon	19998050	19998136	+
GWHAAZE00000001	CDS	19995731	19995946	+
GWHAAZE00000001	CDS	19996685	19996791	+
GWHAAZE00000001	CDS	19996931	19997033	+
GWHAAZE00000001	CDS	19997222	19997389	+
GWHAAZE00000001	CDS	19997887	19997940	+
GWHAAZE00000001	CDS	19998050	19998136	+

Transcript Sequence
>GWHTAAZE000934 GATGAGAGAGAATTTACATATGAGCTAGACAGTGAAAGGGGACCAAATCATTGGGGAGAGATAAAGGCAGAATGGAGAATGTGCAATAGTGGAGGAATGCAATCACCCATTGATCTAATGGATGAGAGAGTTGAAACTGTCTCTAATTTGGGAAGGCTTAATAGGGATTACAAACCTTCTAATGCCACTCTTAGAAACAGAGGACATGATATGGTGTTGAGATGGGCAAGTGGGGCAGGGCATATTCATATAAATGGAACTCAATTTGTACTCAAACAGTTACATTGGCACTCACCTTCTGAACACTCTATCAATGGCAAGAGGTTTGATATGGAGCTTCATCTGGTTCACGAGAGCGCCGAAGGGAAGGCTGCTGTTGTTGCAATTATGTACAAGATCGGACGGCCAGATTCTTTCTTAAAGATGATTGAAAATTATTTGGAATCTCTTGCTGAGACTATACAAGTAGAGAGAGATGTGGGTATAATTAACCCAGTCCAAATAGCCATAGGAAGTAGGAAGTACTACAGGTACATTGGCTCTCTTACAGTTCCACCCTGCACTCAAAATGTTGTCTGGACCATTGTGAGAAAGGTGAGAACTGTTACGAGGAAACAAGTGGAACTTATACGTGATGCTGTTCATGATGAGTCAGAAACTAATGCAAGACCAATACAACCAATGAACCAGCGTTCAGTGAAACTTTTTAGACCTGAAGATCAACAAGGGAATTGA

Network for GWHGAAZE000932

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00194.22	Carb_anhydrase	9	234	3.60E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01674	cah	Metabolic pathways	map01100
K01674	cah	Nitrogen metabolism	map00910

Gene Ontology

GO term	Ontology	Name
GO:0004089	molecular_function	carbonate dehydratase activity
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.007
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.112
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.102
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.307
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.171
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.414
	SRR8316900	Third green stage	0.088
	SRR8316901	Third green stage	0.048
	SRR8316898	Complete white stage	0.300
	SRR8316899	Complete white stage	0.175
	SRR8316903	Complete white stage	0.127
	SRR8316902	Silver flowering stage	0.072
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.159
	SRR8316906	Gold flowering stage	0.459
	SRR8316907	Gold flowering stage	0.170
	SRR8316908	Gold flowering stage	0.446
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.035
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.057
	CNS0095594	Slightly white alabastrum(diploid) 3	0.105
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.289
	CNS0095601	Golden flower (diploid) 1	0.066
	CNS0095602	Golden flower (diploid) 2	0.204
	CNS0095603	Golden flower (diploid) 3	0.267
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.053
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.390
	CNS0095610	Silvery flower (tetraploid) 1	0.261
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.119
	CNS0095613	Golden flower (tetraploid) 1	0.289
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.117
	CRR073312	Silver flowering 1	0.238
	CRR073313	Silver flowering 2	0.650
	CRR073314	Silver flowering 3	0.207
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	3.007
	CRR073319	Tawny withering 2	4.827
	CRR073320	Tawny withering 3	3.966