Detail information of GWHGAAZE000939


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002285265.10PREDICTED: uncharacterized protein LOC100233041 [Vitis vinifera]
trEMBLtr|F6GU18|F6GU18_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB43682.1}
TAIR10AT5G60710.10Zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2013600020140508+
GWHAAZE00000001mRNA2013600020140508+
GWHAAZE00000001exon2013600020136245+
GWHAAZE00000001exon2013856820140508+
GWHAAZE00000001CDS2013600020136245+
GWHAAZE00000001CDS2013856820140508+
Transcript Sequence

Network for GWHGAAZE000939

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_2841295.50E-08
PF00092.29VWA2784619.90E-25
PF14624.7Vwaint6297011.60E-21
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf41.434
SRR3591706second leaf45.787
SRR3591707mature leaf42.389
SRR3591708Shoot apex44.267
SRR3591709Stem70.079
SRR3591710White floral bud23.644
SRR3591711White flower28.547
SRR3591712Green floral bud24.614
SRR3591713Yellow flower43.471
SRP173429 SRR8316895Juvenile bud stage 15.144
SRR8316896Juvenile bud stage 17.548
SRR8316897Juvenile bud stage 6.930
SRR8316894Third green stage 9.539
SRR8316900Third green stage 16.755
SRR8316901Third green stage 16.048
SRR8316898Complete white stage 3.253
SRR8316899Complete white stage 32.173
SRR8316903Complete white stage 9.100
SRR8316902Silver flowering stage5.190
SRR8316904Silver flowering stage8.486
SRR8316905Silver flowering stage3.381
SRR8316906Gold flowering stage 12.799
SRR8316907Gold flowering stage 23.278
SRR8316908Gold flowering stage 18.226
SRP132670SRR6706286Control20.510
SRR6706287Light intensity 50%22.892
SRR6706288Light intensity 20%23.937
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.200
CNS0095593Slightly white alabastrum(diploid) 212.830
CNS0095594Slightly white alabastrum(diploid) 311.513
CNS0095595Whole white alabastrum(diploid) 29.896
CNS0095596Whole white alabastrum(diploid) 36.685
CNS0095597Whole white alabastrum(diploid) 48.499
CNS0095598Silvery flower (diploied) 117.445
CNS0095599Silvery flower (diploied) 29.399
CNS0095600Silvery flower (diploied) 311.025
CNS0095601Golden flower (diploid) 17.743
CNS0095602Golden flower (diploid) 227.615
CNS0095603Golden flower (diploid) 329.723
CNS0095604Slightly white alabastrum(tetraploid) 117.432
CNS0095605Slightly white alabastrum(tetraploid) 213.018
CNS0095606Slightly white alabastrum(tetraploid) 342.574
CNS0095607Whole white alabastrum(tetraploid) 19.714
CNS0095608Whole white alabastrum(tetraploid) 25.823
CNS0095609Whole white alabastrum(tetraploid) 313.270
CNS0095610Silvery flower (tetraploid) 113.970
CNS0095611Silvery flower (tetraploid) 216.647
CNS0095612Silvery flower (tetraploid) 313.012
CNS0095613Golden flower (tetraploid) 18.784
CNS0095614Golden flower (tetraploid) 217.461
CNS0095615Golden flower (tetraploid) 337.972
CRA001975CRR073297Stem 145.257
CRR073298Stem 246.234
CRR073299Stem 347.894
CRR073300Leaf 142.127
CRR073301Leaf 247.481
CRR073302Leaf 338.315
CRR073303Juvenile bud 140.640
CRR073304Juvenile bud 221.092
CRR073305Juvenile bud 367.606
CRR073306Third green 117.009
CRR073307Third green 220.754
CRR073308Third green 319.331
CRR073309Second white 112.040
CRR073310Second white 27.575
CRR073311Second white 310.046
CRR073312Silver flowering 120.116
CRR073313Silver flowering 218.782
CRR073314Silver flowering 313.291
CRR073315Gold flowering 145.118
CRR073316Gold flowering 248.602
CRR073317Gold flowering 362.998
CRR073318Tawny withering 143.682
CRR073319Tawny withering 222.333
CRR073320Tawny withering 346.630