Gene detail

Detail information of GWHGAAZE000948

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009795846.1	2.66087E-45	PREDICTED: GATA transcription factor 11-like isoform X2 [Nicotiana sylvestris]
Swissprot	tr\|Q9SV30\|GATA8_ARATH	8E-33	GATA transcription factor 8
trEMBL	tr\|Q9AVU3\|Q9AVU3_TOBAC	3E-45	GATA-1 zinc finger protein {ECO:0000313\|EMBL:CAC28528.1}
TAIR10	AT3G54810.2	1E-28	Plant-specific GATA-type zinc finger transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	20323752	20327547	+
GWHAAZE00000001	mRNA	20323752	20327547	+
GWHAAZE00000001	exon	20323752	20323918	+
GWHAAZE00000001	exon	20325319	20325573	+
GWHAAZE00000001	exon	20327080	20327547	+
GWHAAZE00000001	five_prime_UTR	20323752	20323909	+
GWHAAZE00000001	CDS	20323910	20323918	+
GWHAAZE00000001	CDS	20325319	20325573	+
GWHAAZE00000001	CDS	20327080	20327547	+

Transcript Sequence
>GWHTAAZE000950 AGATCTAGAGAGAGAAAAAACCAGAATGTGCCCCTCCCTATCTTTCCCATCTAATCAATCCTTTCTCTTTCTCTCTCTAACACACTGCAAATTCAGCTGCAATTGTTATAGCTATACCTAGGGCTTTTCTTTGTGTCAATGATTCCCGATTCTCTCTCATGTCTAAGAATATCACCACTATGATTGGGTTTGGCTTTTGGGATGGTAGTAATAATGGGTTCGCCGGTGTTAATGACAATGTACTCAATGTATTGGATTTCCCCATGGAAAGTTTGGAAGGGGATGACCTTGCCGAAGATTTGAATTCTAAATTCCGACGCTTAGGACCAATTCCTTGGGAAGCGTTGCAGAGATTATCATCAACTCCTACACTTGATCTACAAAATGGAAGTTCGGATATGCAGTCTGATTCCTCTGTGCTGAGCGAGCAAATGTGTCAGCTAAACCAGGAGCCAGAATTGGCTGAAGAAACACCAATCATCAATAATCCCTGCAATTCATCCATCAGAAAAGAGCCACCAGTCCCACTTGAACCACCGCGCAGCCCAATCTCCACCCTCTCAAGCAGCAGCTCTTGCTCCGGAGAAAAAACTGTGCCCATTTCTCTAAAATCTCCTATCAATAATTCGAAAACCAGAAAAAGCTGGCGGAAGAAAAGGAAAATTTCGCAACTCTTTAGCGTTAAGCAAAACCCTTTCAAAAAATGCATGCATTGTGAGAGCACAAGAACCCCGCAGTGGAGGGATGGGCCGATGGGACCAAAGACACTATGCAACGCGTGTGGGGTCCGCTACCGGACCGGCCGTCTCTTGCCAGAGTACCGGCCTGCTGGGAGTCCTACATTTGTTCCATCTTTGCACTCAAACTTACACAGAAGGTTGTTGAAATGA

Network for GWHGAAZE000948

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00320.28	GATA	183	217	2.80E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-GATA

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0008270	molecular_function	zinc ion binding
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.044
	SRR3591706	second leaf	12.051
	SRR3591707	mature leaf	15.349
	SRR3591708	Shoot apex	12.557
	SRR3591709	Stem	12.715
	SRR3591710	White floral bud	12.785
	SRR3591711	White flower	13.280
	SRR3591712	Green floral bud	14.685
	SRR3591713	Yellow flower	12.548
SRP173429	SRR8316895	Juvenile bud stage	13.256
	SRR8316896	Juvenile bud stage	21.536
	SRR8316897	Juvenile bud stage	10.873
	SRR8316894	Third green stage	7.827
	SRR8316900	Third green stage	24.632
	SRR8316901	Third green stage	23.011
	SRR8316898	Complete white stage	14.724
	SRR8316899	Complete white stage	29.324
	SRR8316903	Complete white stage	20.025
	SRR8316902	Silver flowering stage	11.416
	SRR8316904	Silver flowering stage	18.707
	SRR8316905	Silver flowering stage	8.252
	SRR8316906	Gold flowering stage	24.746
	SRR8316907	Gold flowering stage	26.259
	SRR8316908	Gold flowering stage	33.046
SRP132670	SRR6706286	Control	24.698
	SRR6706287	Light intensity 50%	21.610
	SRR6706288	Light intensity 20%	20.102
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.692
	CNS0095593	Slightly white alabastrum(diploid) 2	14.507
	CNS0095594	Slightly white alabastrum(diploid) 3	13.540
	CNS0095595	Whole white alabastrum(diploid) 2	10.655
	CNS0095596	Whole white alabastrum(diploid) 3	14.670
	CNS0095597	Whole white alabastrum(diploid) 4	11.798
	CNS0095598	Silvery flower (diploied) 1	10.235
	CNS0095599	Silvery flower (diploied) 2	9.002
	CNS0095600	Silvery flower (diploied) 3	23.443
	CNS0095601	Golden flower (diploid) 1	7.565
	CNS0095602	Golden flower (diploid) 2	18.462
	CNS0095603	Golden flower (diploid) 3	18.652
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.702
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.727
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.792
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.623
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.134
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.950
	CNS0095610	Silvery flower (tetraploid) 1	24.355
	CNS0095611	Silvery flower (tetraploid) 2	25.622
	CNS0095612	Silvery flower (tetraploid) 3	24.555
	CNS0095613	Golden flower (tetraploid) 1	16.424
	CNS0095614	Golden flower (tetraploid) 2	21.081
	CNS0095615	Golden flower (tetraploid) 3	22.304
CRA001975	CRR073297	Stem 1	26.143
	CRR073298	Stem 2	27.858
	CRR073299	Stem 3	21.424
	CRR073300	Leaf 1	30.447
	CRR073301	Leaf 2	28.274
	CRR073302	Leaf 3	30.676
	CRR073303	Juvenile bud 1	26.485
	CRR073304	Juvenile bud 2	27.762
	CRR073305	Juvenile bud 3	26.775
	CRR073306	Third green 1	24.207
	CRR073307	Third green 2	21.935
	CRR073308	Third green 3	20.001
	CRR073309	Second white 1	23.039
	CRR073310	Second white 2	17.247
	CRR073311	Second white 3	16.639
	CRR073312	Silver flowering 1	12.890
	CRR073313	Silver flowering 2	17.686
	CRR073314	Silver flowering 3	14.626
	CRR073315	Gold flowering 1	9.200
	CRR073316	Gold flowering 2	13.548
	CRR073317	Gold flowering 3	14.280
	CRR073318	Tawny withering 1	11.499
	CRR073319	Tawny withering 2	8.003
	CRR073320	Tawny withering 3	8.405