Gene detail

Detail information of GWHGAAZE000967

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO96800.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9XF57\|PEX7_ARATH	0	Peroxisome biogenesis protein 7
trEMBL	tr\|A0A068TKJ3\|A0A068TKJ3_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO96800.1}
TAIR10	AT1G29260.1	1E-157	peroxin 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	20628113	20629333	-
GWHAAZE00000001	mRNA	20628113	20629333	-
GWHAAZE00000001	exon	20628113	20628389	-
GWHAAZE00000001	exon	20628657	20629333	-
GWHAAZE00000001	CDS	20628657	20629333	-
GWHAAZE00000001	CDS	20628113	20628389	-

Transcript Sequence
>GWHTAAZE000969 ATGCCAGTCTTCAAAACCCCATTCAACGGCTACGCGGTGAAATTCAGCCCCTTCTACGAGCACCGCCTTGCCGTCGCCACCGCCCAAAACTTCGGCATCCTCGGCAACGGCCGCCTCCACATCCTCGATCTCTCCCCCGCCTCCCCCACCCCAATCGAAATCACTTCCTTCGACACCTCCGACGGAGTCTACGACCTCTCCTGGTCTGAATCACACGACTCCCTCATAGTCGCCGCTATCGCCGACGGTTCCGTCAAGCTCTACGACCTCTCCCTTCCCCCAACCGCCAATCCCGTTCGGTCACTCCACGAACACACCCGCGAGGCTCACTCTGTTGACTACAATACCGTCCGCAAGGATTCCTTTCTCTCCTCTTCTTGGGATGATACGATCAAGCTTTGGACTATTGATCGCCCCACTTCAGTCCGCACTTTTAAGGAACATGCTTATTGTGTTTATTCTAGTGCGTGGAACCCGCGGCACGCCGATGTTTTCGCGTCCGCGTCGGGGGATTGTACGGTGCGTGTGTGGGACGTGAGGGAACCGGGGTCTACAATGATTCTACCGGCGCATGAATTCGAGATTTTGTCTTGCGATTGGAGTAAATATGACGAGTGTGTCATTGCTACTGCTTCTGTTGATAAGTCTATTAAGATTTGGGATGTCAGGAATTACAGGGTTCCGGTGGCGGTGTTGAATGGGCATGGTTATGCGGTGAGGAAGGTGAAGTTTTCGCCTCATAGGGGGAGTGTGATTGCTTCGTGTTCGTATGATATGACGGTTTGTTTGTGGGATTATATGGTGGAAGATTCTTTAATTGGGAGGTATGATCACCACACTGAGTTTGCTGTTGGGGTTGATATGAGTGTTCTTGTTGAAGGGCTTTTGGCTAGTACTGGATGGGATGAACTAGTTTATGTTTGGCAACATGGTACTGATCCAAGAGCACCTTAA

Network for GWHGAAZE000967

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0005

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	98	134	0.24
PF00400.33	WD40	142	178	0.0027
PF00400.33	WD40	186	221	0.00017
PF00400.33	WD40	228	265	0.00034

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K13341	PEX7, PTS2R	Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.452
	SRR3591706	second leaf	17.947
	SRR3591707	mature leaf	18.463
	SRR3591708	Shoot apex	27.405
	SRR3591709	Stem	40.506
	SRR3591710	White floral bud	42.975
	SRR3591711	White flower	54.618
	SRR3591712	Green floral bud	38.920
	SRR3591713	Yellow flower	54.993
SRP173429	SRR8316895	Juvenile bud stage	20.756
	SRR8316896	Juvenile bud stage	32.560
	SRR8316897	Juvenile bud stage	14.282
	SRR8316894	Third green stage	9.877
	SRR8316900	Third green stage	28.810
	SRR8316901	Third green stage	29.413
	SRR8316898	Complete white stage	21.643
	SRR8316899	Complete white stage	41.788
	SRR8316903	Complete white stage	29.786
	SRR8316902	Silver flowering stage	20.590
	SRR8316904	Silver flowering stage	24.791
	SRR8316905	Silver flowering stage	14.656
	SRR8316906	Gold flowering stage	43.391
	SRR8316907	Gold flowering stage	43.696
	SRR8316908	Gold flowering stage	47.925
SRP132670	SRR6706286	Control	48.483
	SRR6706287	Light intensity 50%	44.612
	SRR6706288	Light intensity 20%	43.076
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.967
	CNS0095593	Slightly white alabastrum(diploid) 2	31.974
	CNS0095594	Slightly white alabastrum(diploid) 3	28.039
	CNS0095595	Whole white alabastrum(diploid) 2	24.949
	CNS0095596	Whole white alabastrum(diploid) 3	26.454
	CNS0095597	Whole white alabastrum(diploid) 4	25.027
	CNS0095598	Silvery flower (diploied) 1	34.584
	CNS0095599	Silvery flower (diploied) 2	35.881
	CNS0095600	Silvery flower (diploied) 3	73.660
	CNS0095601	Golden flower (diploid) 1	34.857
	CNS0095602	Golden flower (diploid) 2	69.156
	CNS0095603	Golden flower (diploid) 3	69.800
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.061
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.365
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.919
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.976
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.692
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.995
	CNS0095610	Silvery flower (tetraploid) 1	61.113
	CNS0095611	Silvery flower (tetraploid) 2	66.096
	CNS0095612	Silvery flower (tetraploid) 3	63.726
	CNS0095613	Golden flower (tetraploid) 1	46.877
	CNS0095614	Golden flower (tetraploid) 2	61.563
	CNS0095615	Golden flower (tetraploid) 3	72.432
CRA001975	CRR073297	Stem 1	33.912
	CRR073298	Stem 2	38.113
	CRR073299	Stem 3	43.869
	CRR073300	Leaf 1	35.120
	CRR073301	Leaf 2	40.551
	CRR073302	Leaf 3	39.603
	CRR073303	Juvenile bud 1	39.445
	CRR073304	Juvenile bud 2	46.693
	CRR073305	Juvenile bud 3	49.240
	CRR073306	Third green 1	68.655
	CRR073307	Third green 2	65.659
	CRR073308	Third green 3	63.473
	CRR073309	Second white 1	83.902
	CRR073310	Second white 2	56.172
	CRR073311	Second white 3	48.690
	CRR073312	Silver flowering 1	50.846
	CRR073313	Silver flowering 2	50.955
	CRR073314	Silver flowering 3	37.971
	CRR073315	Gold flowering 1	39.025
	CRR073316	Gold flowering 2	58.391
	CRR073317	Gold flowering 3	46.435
	CRR073318	Tawny withering 1	48.207
	CRR073319	Tawny withering 2	43.310
	CRR073320	Tawny withering 3	48.092