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Detail information of GWHGAAZE000971
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
KHG05634.1
0
Dolichol kinase [Gossypium arboreum]
trEMBL
tr|A0A061GYB8|A0A061GYB8_THECC
0
Phosphatidate cytidylyltransferase family protein {ECO:0000313|EMBL:EOY34458.1}
TAIR10
AT3G45040.1
1E-169
phosphatidate cytidylyltransferase family protein
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000001
gene
20681208
20688775
+
GWHAAZE00000001
mRNA
20681208
20688775
+
GWHAAZE00000001
exon
20681208
20681319
+
GWHAAZE00000001
exon
20681848
20682054
+
GWHAAZE00000001
exon
20682234
20682338
+
GWHAAZE00000001
exon
20683979
20684049
+
GWHAAZE00000001
exon
20684140
20684220
+
GWHAAZE00000001
exon
20684341
20684555
+
GWHAAZE00000001
exon
20685997
20686186
+
GWHAAZE00000001
exon
20686291
20686356
+
GWHAAZE00000001
exon
20687110
20687198
+
GWHAAZE00000001
exon
20687294
20687408
+
GWHAAZE00000001
exon
20687850
20687901
+
GWHAAZE00000001
exon
20688036
20688173
+
GWHAAZE00000001
exon
20688708
20688775
+
GWHAAZE00000001
CDS
20681208
20681319
+
GWHAAZE00000001
CDS
20681848
20682054
+
GWHAAZE00000001
CDS
20682234
20682338
+
GWHAAZE00000001
CDS
20683979
20684049
+
GWHAAZE00000001
CDS
20684140
20684220
+
GWHAAZE00000001
CDS
20684341
20684555
+
GWHAAZE00000001
CDS
20685997
20686186
+
GWHAAZE00000001
CDS
20686291
20686356
+
GWHAAZE00000001
CDS
20687110
20687198
+
GWHAAZE00000001
CDS
20687294
20687408
+
GWHAAZE00000001
CDS
20687850
20687901
+
GWHAAZE00000001
CDS
20688036
20688173
+
GWHAAZE00000001
CDS
20688708
20688775
+
Transcript Sequence
>GWHTAAZE000973 CCAGGTGCTTCGTCAGGGATTCTATTAGGGGCAGTTACGCTGCCAGGTCTTATGCTCTCGCGGTTGATACAGAGTTTGAGAGCAGTTTCACTGGATGAAGTTGGTGTTGAAGAACTTGAATATCTGCGGTTACAATATTGGGCCGTTACTGCAAGCTGCCTTAGTGTGCTTGTTTTTCTCCTCTCCATTACTCGCCGTCAACCCAAAAGTGCTGATTCTGCCAGTTCTCCTACTGTTTGGGAATCAATATTTAGCTTATGTTGCATAGGATTTTGTGCAACATTATGCTGTGTGTCTTTTGCTGCAAATTCTAATACCAGCTACTACACAACATTAGCGTTAATGTGGGTACTCTGTCATGGATTGGCGGCAGTGAAATTAATTCAGCACGTTCTTCATACTTTCCCAAGATGTGCTTCGATTGGGGAAGCACATTTGGTGACTGCGGGTCTTGTTATCTATTTTGGGGACATGTTTGTGTGTACAGTTGCAAAGATTTTTGAATACTCGATACCGTCAGCATTAATTCCTGTACAACATGGAATCAAACGAAGTGAGATAAGCACCATAATCCAGGGTGTGCTGCTAGGCCTTGTTCTTTTTCCCATGTTCTTCAAAGTTGTTCTCCGGAGCTGGGAACGTTTTACAAGTTCAACTCATTCTGAAGTTGCATCAGACCTTGAGATCAAAAGATCTATTATGTTCTATGCTTCCCTGGCATTTATCTTAACTGTTTTTGTTCCGTCATGGATGCAGTTTGTTCAAGATTTTCCTGCACATCCTATACTATGGGTATTTAGTTTCGTTTTCTCAGAACCACTCAAGAGGCTTTCGTTATGTATTTACTGGGTTGCTGTTATATATGCATCAGTGCTACGGTTTTACAGTATTTCAAAGAACAGTAAGATTGAGAGAATTCTTCTTCGGAAATATTACCATCTGATGGCTGTTTTAATGTTTGTGCCTGCTCTTATCTACCAGCCGAAATTTCTTGATCTTGCGTTTGGTGCAGCTTTGGCTATTTTCTTAGTGTTGGAAATTATTCGAGTGTGGAGAATTTGGCCTCTGGGACACATTGTGCATCAGTTTATGAATGCTTTTACTGATCATCGTGACTCTGATCTTCTTATTGTCAGCCATTTTTCACTCTTGTTGGGATGCGCGCTTCCTATTTGGATGTCTTCTGGTTTCAATGATCGACCACTAGCCCCTTTTGCTGGCATTTTGAGCCTTGGAATTGGTGACACAATGGCATCAATGGTTGGACACAAGTATGGAGTTCTCCGATGGAGCAAAACAGGAAAGAAAACTGTTGAAGGCACTGCAGCTGGCATAACCTCTGTCTTGGCTGCTTGCTCTGTTCTCCTTCCAGTTTTAGCAACAACTGGTTATATTTTTACTCAGGTCTCTCTCTCTCTCTCTCTCTCTCATGGCGATGAACCATTGGTTGTCTATTCTCCTAGCCGTGACTGTGAGTGGCTTATTGGAGGCTTACACCGCGCAGCTTGA
Network for GWHGAAZE000971
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
--
--
--
--
--
Protein Sequence
>GWHPAAZE000972 PGASSGILLGAVTLPGLMLSRLIQSLRAVSLDEVGVEELEYLRLQYWAVTASCLSVLVFLLSITRRQPKSADSASSPTVWESIFSLCCIGFCATLCCVSFAANSNTSYYTTLALMWVLCHGLAAVKLIQHVLHTFPRCASIGEAHLVTAGLVIYFGDMFVCTVAKIFEYSIPSALIPVQHGIKRSEISTIIQGVLLGLVLFPMFFKVVLRSWERFTSSTHSEVASDLEIKRSIMFYASLAFILTVFVPSWMQFVQDFPAHPILWVFSFVFSEPLKRLSLCIYWVAVIYASVLRFYSISKNSKIERILLRKYYHLMAVLMFVPALIYQPKFLDLAFGAALAIFLVLEIIRVWRIWPLGHIVHQFMNAFTDHRDSDLLIVSHFSLLLGCALPIWMSSGFNDRPLAPFAGILSLGIGDTMASMVGHKYGVLRWSKTGKKTVEGTAAGITSVLAACSVLLPVLATTGYIFTQVSLSLSLSHGDEPLVVYSPSRDCEWLIGGLHRAA
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K00902
DOLK
Metabolic pathways
map01100
N-Glycan biosynthesis
map00510
Gene Ontology
GO term
Ontology
Name
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
30.691
SRR3591706
second leaf
7.489
SRR3591707
mature leaf
10.634
SRR3591708
Shoot apex
12.566
SRR3591709
Stem
21.933
SRR3591710
White floral bud
31.603
SRR3591711
White flower
25.312
SRR3591712
Green floral bud
27.336
SRR3591713
Yellow flower
22.871
SRP173429
SRR8316895
Juvenile bud stage
20.235
SRR8316896
Juvenile bud stage
33.184
SRR8316897
Juvenile bud stage
26.353
SRR8316894
Third green stage
9.753
SRR8316900
Third green stage
21.458
SRR8316901
Third green stage
25.958
SRR8316898
Complete white stage
6.536
SRR8316899
Complete white stage
18.891
SRR8316903
Complete white stage
13.903
SRR8316902
Silver flowering stage
13.487
SRR8316904
Silver flowering stage
17.544
SRR8316905
Silver flowering stage
7.260
SRR8316906
Gold flowering stage
25.187
SRR8316907
Gold flowering stage
20.741
SRR8316908
Gold flowering stage
29.889
SRP132670
SRR6706286
Control
13.340
SRR6706287
Light intensity 50%
13.284
SRR6706288
Light intensity 20%
13.776
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
21.614
CNS0095593
Slightly white alabastrum(diploid) 2
20.076
CNS0095594
Slightly white alabastrum(diploid) 3
19.933
CNS0095595
Whole white alabastrum(diploid) 2
27.093
CNS0095596
Whole white alabastrum(diploid) 3
22.335
CNS0095597
Whole white alabastrum(diploid) 4
27.523
CNS0095598
Silvery flower (diploied) 1
13.426
CNS0095599
Silvery flower (diploied) 2
19.091
CNS0095600
Silvery flower (diploied) 3
24.096
CNS0095601
Golden flower (diploid) 1
17.584
CNS0095602
Golden flower (diploid) 2
25.326
CNS0095603
Golden flower (diploid) 3
25.225
CNS0095604
Slightly white alabastrum(tetraploid) 1
15.564
CNS0095605
Slightly white alabastrum(tetraploid) 2
16.642
CNS0095606
Slightly white alabastrum(tetraploid) 3
11.876
CNS0095607
Whole white alabastrum(tetraploid) 1
23.581
CNS0095608
Whole white alabastrum(tetraploid) 2
28.040
CNS0095609
Whole white alabastrum(tetraploid) 3
17.546
CNS0095610
Silvery flower (tetraploid) 1
13.818
CNS0095611
Silvery flower (tetraploid) 2
12.286
CNS0095612
Silvery flower (tetraploid) 3
19.522
CNS0095613
Golden flower (tetraploid) 1
8.581
CNS0095614
Golden flower (tetraploid) 2
12.789
CNS0095615
Golden flower (tetraploid) 3
18.389
CRA001975
CRR073297
Stem 1
17.216
CRR073298
Stem 2
13.011
CRR073299
Stem 3
11.271
CRR073300
Leaf 1
15.965
CRR073301
Leaf 2
15.718
CRR073302
Leaf 3
12.872
CRR073303
Juvenile bud 1
14.908
CRR073304
Juvenile bud 2
10.507
CRR073305
Juvenile bud 3
13.915
CRR073306
Third green 1
13.242
CRR073307
Third green 2
11.684
CRR073308
Third green 3
11.884
CRR073309
Second white 1
19.716
CRR073310
Second white 2
18.942
CRR073311
Second white 3
22.166
CRR073312
Silver flowering 1
27.567
CRR073313
Silver flowering 2
26.202
CRR073314
Silver flowering 3
21.898
CRR073315
Gold flowering 1
5.126
CRR073316
Gold flowering 2
11.240
CRR073317
Gold flowering 3
6.845
CRR073318
Tawny withering 1
18.769
CRR073319
Tawny withering 2
21.511
CRR073320
Tawny withering 3
20.935