Gene detail

Detail information of GWHGAAZE000985

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AIQ82678.1	1.33878E-95	RAX-like transcription factor RAX3 [Gossypium hirsutum]
Swissprot	tr\|Q9SJL7\|RAX2_ARATH	2E-70	Transcription factor RAX2
trEMBL	tr\|A0A089ND58\|A0A089ND58_GOSHI	5E-96	RAX-like transcription factor RAX3 {ECO:0000313\|EMBL:AIQ82678.1}
TAIR10	AT5G57620.1	3E-62	myb domain protein 36

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	21075260	21077509	+
GWHAAZE00000001	mRNA	21075260	21077509	+
GWHAAZE00000001	exon	21075260	21075386	+
GWHAAZE00000001	exon	21075839	21075968	+
GWHAAZE00000001	exon	21076843	21077509	+
GWHAAZE00000001	CDS	21075260	21075386	+
GWHAAZE00000001	CDS	21075839	21075968	+
GWHAAZE00000001	CDS	21076843	21077509	+

Transcript Sequence
>GWHTAAZE000987 GCACCTTGTTGTGACAAGGCAAATGTGAAGAAAGGTCCATGGGCTCCAGAAGAAGATGCTAAGCTTAAAGATTTCATTGAGAAATATGGCACTGGTGGCAATTGGATTGCCCTTCCTCAAAAAGCTGGGCTAAAGAGATGTGGGAAGAGCTGTAGATTGAGATGGCTAAACTATCTAAGGCCTAACATTAAACATGGTGAGTTTACAGAAGAGGAAGATAGGATAATCTTGAGCTTGTACTCTAGCATTGGAAGCAGGTGGTCAATTATAGCTTCTCAGTTACCCGGCAGGACAGATAACGATATCAAAAACTATTGGAACACGAAGCTGAAGAAGAAACTCATGGCCATTGCTACTCAAAGAAAACCAACCCCATTCCCAAATCAATATCAAAATCAAAATCCACCCCAATATAGAGAGGTATCCACCCCATATTACTCACCAATGACCTCCTTCACATCCCTTCAAAATTTGTTCAACAACACCAGCCCTTTAGCAACGAATAACACACCTTTAGTGACGGATTACTCTGTTGTTCACAACCAAGAAAACTCGTTGGGTACTATGAACTATTGGCCACTAAAAGATGGGCTCTTCATGTTTGGGGGTGATCAAGCTAGTTGCTCCTCCTCGGATGGGAGTGGTACCCAAATGAAGCAAGAGGACAATTTTGCCCTCCAAAGTGGGTACTACCCACCAAGTGCATTTGAGGAGAACAGAGAGATGGTTCTTGATCTTGATCCTAACAGAGGAGGGTATTTTGGGAATAATTGCAATGATCATGATCAAGGTACAACCACTGCAATGCAGTGTGGTGTTGAGGAGGTTAAGCAACAACTGAACAGCTACTCGTTGAATAATGATGAAAACAAGACAAATGAGAAGGACATGTACTACTACTATTCCAACTATTACTGGAGTTGA

Network for GWHGAAZE000985

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	11	59	7.70E-13
PF00249.32	Myb_DNA-binding	66	108	1.30E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.906
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.140
	SRR3591709	Stem	5.323
	SRR3591710	White floral bud	1.131
	SRR3591711	White flower	0.027
	SRR3591712	Green floral bud	0.159
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.472
	SRR8316896	Juvenile bud stage	0.658
	SRR8316897	Juvenile bud stage	0.627
	SRR8316894	Third green stage	0.557
	SRR8316900	Third green stage	2.587
	SRR8316901	Third green stage	2.310
	SRR8316898	Complete white stage	0.230
	SRR8316899	Complete white stage	4.037
	SRR8316903	Complete white stage	1.231
	SRR8316902	Silver flowering stage	0.889
	SRR8316904	Silver flowering stage	0.147
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.696
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.655
	SRR6706287	Light intensity 50%	1.675
	SRR6706288	Light intensity 20%	1.272
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.520
	CNS0095593	Slightly white alabastrum(diploid) 2	2.420
	CNS0095594	Slightly white alabastrum(diploid) 3	1.160
	CNS0095595	Whole white alabastrum(diploid) 2	1.312
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	1.586
	CNS0095598	Silvery flower (diploied) 1	1.166
	CNS0095599	Silvery flower (diploied) 2	0.374
	CNS0095600	Silvery flower (diploied) 3	1.554
	CNS0095601	Golden flower (diploid) 1	0.239
	CNS0095602	Golden flower (diploid) 2	0.474
	CNS0095603	Golden flower (diploid) 3	0.530
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.901
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.138
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.922
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.608
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.654
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	3.670
	CNS0095611	Silvery flower (tetraploid) 2	0.934
	CNS0095612	Silvery flower (tetraploid) 3	0.051
	CNS0095613	Golden flower (tetraploid) 1	0.044
	CNS0095614	Golden flower (tetraploid) 2	0.678
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.553
	CRR073298	Stem 2	1.241
	CRR073299	Stem 3	1.112
	CRR073300	Leaf 1	1.600
	CRR073301	Leaf 2	1.725
	CRR073302	Leaf 3	1.372
	CRR073303	Juvenile bud 1	1.519
	CRR073304	Juvenile bud 2	0.182
	CRR073305	Juvenile bud 3	0.743
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.225
	CRR073309	Second white 1	0.002
	CRR073310	Second white 2	0.005
	CRR073311	Second white 3	0.003
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.003
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	6.676
	CRR073319	Tawny withering 2	7.859
	CRR073320	Tawny withering 3	7.980