Gene detail

Detail information of GWHGAAZE000986

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009603383.1	PREDICTED: 4-coumarate--CoA ligase-like 7 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9M0X9\|4CLL7_ARATH	4-coumarate--CoA ligase-like 7
trEMBL	tr\|W8Q8X1\|W8Q8X1_9LAMI	4-coumarate:coenzyme A ligase 4 {ECO:0000313\|EMBL:AHL44983.1}
TAIR10	AT4G05160.1	AMP-dependent synthetase and ligase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	21161263	21166643	+
GWHAAZE00000001	mRNA	21161263	21166643	+
GWHAAZE00000001	exon	21161263	21161687	+
GWHAAZE00000001	exon	21162898	21163402	+
GWHAAZE00000001	exon	21163968	21164157	+
GWHAAZE00000001	exon	21164514	21164659	+
GWHAAZE00000001	exon	21165723	21165790	+
GWHAAZE00000001	exon	21165905	21166007	+
GWHAAZE00000001	exon	21166530	21166643	+
GWHAAZE00000001	CDS	21161263	21161687	+
GWHAAZE00000001	CDS	21162898	21163402	+
GWHAAZE00000001	CDS	21163968	21164157	+
GWHAAZE00000001	CDS	21164514	21164659	+
GWHAAZE00000001	CDS	21165723	21165790	+
GWHAAZE00000001	CDS	21165905	21166007	+
GWHAAZE00000001	CDS	21166530	21166643	+

Transcript Sequence
>GWHTAAZE000988 ATGGAGAAATCAGGCTATGGCCGTGACGGAATCTACAGATCACTCCGCCCCAAAATTCTATTCCCCAAAGACCCAAACCTCTCAATGATCACCTTCCTCCTCCGCAACATCTCTTCTTACCCTCACAAACCCGCCTTAATCGACGCCGACTCAAACCAAACCCTAAACTTCGCCGAATTCAAATCAACCCTCTCCAAAGTATCCATCGGATTACAAAAATTAGGTGTTAGGAAAAACGATGTCGTCTTGATCTTTGCCCCGAACTCGATTCAGTTCCCCCTCTGTTTCTTTGGAATTATCGCCCTCGGGGCAATTGCTACTACTGTCAATCCTGCTTATACTGTGGCGGAGATTTCGAAGCAGGTGAAGGATTGTAAGCCTAAGATGGTGATTACGGTTGGGGATTTATGGGAGAAAGTGAAGGGTGAATTGGTTAATTCTGCTGGTTCGGTTTCAAATTTGCCCAAGGTTTCGATTAAGCAAAGTGATACTGCTGCTTTATTGTATTCATCTGGTACTACTGGGGTTAGTAAGGGTGTGGTACTTAGCCATGGAAACTTCATTGCTGCGGCTCTAATGGTGACCTCCGATCAAGAATTTGCCGGCGAGATGCATAATTTGTTCTTGTGTGTGCTTCCAATGTTTCATGTTTTTGGGCTTGCGGTTATTCTTTATTCGCAGCTTCAGAGGGGGAACGGGGTTGTATCTATGGGGAAATTTGATTTCGTGATGATTTTGAAGTCAATTGAGAAGTTCAGAGTGACACATATGTGGGTTGTGCCTCCGATTATACTTGCTTTGGCTAAGCAGAGTGTGGTTAAGAAGTTTGATTTGTCGTCGTTGAAGCAGATTGGTTCTGGTGCAGCTCCTTTGGGGAAAGAGTTGATGGAAAATTGCGCGACTAATTTCCCTCATGCTATAGTTTGTCAGGGCTATGGTATGACAGAAACTTGTGGAATTGTGTCAGTTGAGAATTCTTACGGAGGCACTCGACATTCAGGTTCCACAGGAACGCTTGCTCCGGGAGTGGAATCCCAAATAGTAAGTGTAGATACAGTGAAACCTCTTCCTCCTAAACAGTTGGGCGAAATTTGGGTCCGGGGACCTAACATGATGCAAGGATATCTCAACAATCCGCAGGCCACAAAGCTCACTATAGATAAACAGGGTTGGGTACATACCGGAGATCTTGGTTATTTTGATGAGGAAGGTCAGCTATTTGTTGTTGACCGAATTAAAGAGCTCATCAAATACAAAGGTTTCCAGGTTGCACCGGCGGAGCTTGAAGGACTTCTTGTTTCTCACCCTGAAATATTAGACGCTGTAGTAATACCGTTTCCAGATGCTGAAGCAGGTGAGGTCCCAGCTGCATATGTTGTCCGCTCTCCCAGTAGTTCACTGACTGAAGAAGATGTTCAGAAATTTATTGCGGAACAGGTTGCGCCGTTCAAAAGATTGCGGAGGGTAACCTTCATAAACACTGTGCCAAAGTCGGCTTCAGGGAAAATCCTCAGAAGAGAACTTATCGAGAAAGTCCGATCCAAATTATAA

Network for GWHGAAZE000986

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00501.29	AMP-binding	35	418	3.80E-100
PF13193.7	AMP-binding_C	427	502	1.00E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01904	4CL	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Ubiquinone and other terpenoid-quinone biosynthesis	map00130
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	57.215
	SRR3591706	second leaf	18.198
	SRR3591707	mature leaf	34.549
	SRR3591708	Shoot apex	28.524
	SRR3591709	Stem	74.371
	SRR3591710	White floral bud	340.154
	SRR3591711	White flower	413.659
	SRR3591712	Green floral bud	134.100
	SRR3591713	Yellow flower	387.482
SRP173429	SRR8316895	Juvenile bud stage	17.180
	SRR8316896	Juvenile bud stage	20.989
	SRR8316897	Juvenile bud stage	12.616
	SRR8316894	Third green stage	9.307
	SRR8316900	Third green stage	34.520
	SRR8316901	Third green stage	29.652
	SRR8316898	Complete white stage	57.952
	SRR8316899	Complete white stage	42.863
	SRR8316903	Complete white stage	91.640
	SRR8316902	Silver flowering stage	154.498
	SRR8316904	Silver flowering stage	195.897
	SRR8316905	Silver flowering stage	114.591
	SRR8316906	Gold flowering stage	358.923
	SRR8316907	Gold flowering stage	332.643
	SRR8316908	Gold flowering stage	265.994
SRP132670	SRR6706286	Control	40.076
	SRR6706287	Light intensity 50%	45.333
	SRR6706288	Light intensity 20%	42.483
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.394
	CNS0095593	Slightly white alabastrum(diploid) 2	12.715
	CNS0095594	Slightly white alabastrum(diploid) 3	12.219
	CNS0095595	Whole white alabastrum(diploid) 2	13.728
	CNS0095596	Whole white alabastrum(diploid) 3	12.282
	CNS0095597	Whole white alabastrum(diploid) 4	13.855
	CNS0095598	Silvery flower (diploied) 1	40.578
	CNS0095599	Silvery flower (diploied) 2	41.182
	CNS0095600	Silvery flower (diploied) 3	228.118
	CNS0095601	Golden flower (diploid) 1	60.146
	CNS0095602	Golden flower (diploid) 2	193.991
	CNS0095603	Golden flower (diploid) 3	183.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.378
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.638
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.699
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.221
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.152
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.763
	CNS0095610	Silvery flower (tetraploid) 1	179.635
	CNS0095611	Silvery flower (tetraploid) 2	273.224
	CNS0095612	Silvery flower (tetraploid) 3	494.657
	CNS0095613	Golden flower (tetraploid) 1	129.125
	CNS0095614	Golden flower (tetraploid) 2	177.690
	CNS0095615	Golden flower (tetraploid) 3	284.182
CRA001975	CRR073297	Stem 1	21.342
	CRR073298	Stem 2	20.123
	CRR073299	Stem 3	17.560
	CRR073300	Leaf 1	25.789
	CRR073301	Leaf 2	22.221
	CRR073302	Leaf 3	20.905
	CRR073303	Juvenile bud 1	26.394
	CRR073304	Juvenile bud 2	46.034
	CRR073305	Juvenile bud 3	28.464
	CRR073306	Third green 1	333.137
	CRR073307	Third green 2	178.457
	CRR073308	Third green 3	210.722
	CRR073309	Second white 1	438.706
	CRR073310	Second white 2	454.449
	CRR073311	Second white 3	459.586
	CRR073312	Silver flowering 1	362.412
	CRR073313	Silver flowering 2	326.829
	CRR073314	Silver flowering 3	316.734
	CRR073315	Gold flowering 1	23.413
	CRR073316	Gold flowering 2	32.504
	CRR073317	Gold flowering 3	24.205
	CRR073318	Tawny withering 1	10.027
	CRR073319	Tawny withering 2	8.394
	CRR073320	Tawny withering 3	13.231