Detail information of GWHGAAZE001001


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP07010.15.4636E-44unnamed protein product [Coffea canephora]
Swissprottr|P93231|VPS41_SOLLC9E-38Vacuolar protein sorting-associated protein 41 homolog
trEMBLtr|A0A068UEL2|A0A068UEL2_COFCA2E-44Coffea canephora DH200=94 genomic scaffold, scaffold_24 {ECO:0000313|EMBL:CDP07010.1}
TAIR10AT1G08190.13E-23vacuolar protein sorting 41

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2157411921574499+
GWHAAZE00000001mRNA2157411921574499+
GWHAAZE00000001exon2157411921574499+
GWHAAZE00000001CDS2157411921574499+
Transcript Sequence

Network for GWHGAAZE001001

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K20184VPS41 Autophagy - yeast map04138

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf52.648
SRR3591706second leaf24.385
SRR3591707mature leaf17.958
SRR3591708Shoot apex44.163
SRR3591709Stem45.458
SRR3591710White floral bud41.799
SRR3591711White flower41.876
SRR3591712Green floral bud65.437
SRR3591713Yellow flower34.023
SRP173429 SRR8316895Juvenile bud stage 21.315
SRR8316896Juvenile bud stage 27.257
SRR8316897Juvenile bud stage 22.197
SRR8316894Third green stage 15.196
SRR8316900Third green stage 43.321
SRR8316901Third green stage 41.784
SRR8316898Complete white stage 14.118
SRR8316899Complete white stage 61.987
SRR8316903Complete white stage 24.416
SRR8316902Silver flowering stage9.189
SRR8316904Silver flowering stage14.620
SRR8316905Silver flowering stage6.449
SRR8316906Gold flowering stage 14.753
SRR8316907Gold flowering stage 16.251
SRR8316908Gold flowering stage 14.953
SRP132670SRR6706286Control42.863
SRR6706287Light intensity 50%44.811
SRR6706288Light intensity 20%44.441
CNP0000432CNS0095592Slightly white alabastrum(diploid) 138.459
CNS0095593Slightly white alabastrum(diploid) 244.635
CNS0095594Slightly white alabastrum(diploid) 336.240
CNS0095595Whole white alabastrum(diploid) 246.439
CNS0095596Whole white alabastrum(diploid) 348.770
CNS0095597Whole white alabastrum(diploid) 456.821
CNS0095598Silvery flower (diploied) 130.575
CNS0095599Silvery flower (diploied) 232.249
CNS0095600Silvery flower (diploied) 331.735
CNS0095601Golden flower (diploid) 128.015
CNS0095602Golden flower (diploid) 225.589
CNS0095603Golden flower (diploid) 326.600
CNS0095604Slightly white alabastrum(tetraploid) 154.089
CNS0095605Slightly white alabastrum(tetraploid) 248.379
CNS0095606Slightly white alabastrum(tetraploid) 352.094
CNS0095607Whole white alabastrum(tetraploid) 154.458
CNS0095608Whole white alabastrum(tetraploid) 265.283
CNS0095609Whole white alabastrum(tetraploid) 335.347
CNS0095610Silvery flower (tetraploid) 133.143
CNS0095611Silvery flower (tetraploid) 230.308
CNS0095612Silvery flower (tetraploid) 333.478
CNS0095613Golden flower (tetraploid) 121.744
CNS0095614Golden flower (tetraploid) 222.022
CNS0095615Golden flower (tetraploid) 314.325
CRA001975CRR073297Stem 149.505
CRR073298Stem 239.989
CRR073299Stem 354.566
CRR073300Leaf 156.497
CRR073301Leaf 261.502
CRR073302Leaf 349.974
CRR073303Juvenile bud 177.682
CRR073304Juvenile bud 241.486
CRR073305Juvenile bud 376.028
CRR073306Third green 120.321
CRR073307Third green 220.574
CRR073308Third green 328.273
CRR073309Second white 116.451
CRR073310Second white 222.863
CRR073311Second white 314.475
CRR073312Silver flowering 124.789
CRR073313Silver flowering 230.079
CRR073314Silver flowering 327.254
CRR073315Gold flowering 129.026
CRR073316Gold flowering 239.376
CRR073317Gold flowering 321.452
CRR073318Tawny withering 172.681
CRR073319Tawny withering 277.098
CRR073320Tawny withering 384.166