Detail information of GWHGAAZE001009


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009787109.10PREDICTED: protein argonaute 5 [Nicotiana sylvestris]
Swissprottr|Q9SJK3|AGO5_ARATH0Protein argonaute 5
trEMBLtr|B9HQS2|B9HQS2_POPTR0Protein argonaute {ECO:0000256|RuleBase:RU361178}
TAIR10AT2G27880.10Argonaute family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2168532221699133-
GWHAAZE00000001mRNA2168532221699133-
GWHAAZE00000001exon2168532221685512-
GWHAAZE00000001exon2168608921686159-
GWHAAZE00000001exon2168669721686728-
GWHAAZE00000001exon2168799821688071-
GWHAAZE00000001exon2168817421688309-
GWHAAZE00000001exon2168893921689002-
GWHAAZE00000001exon2168919321689255-
GWHAAZE00000001exon2168982021689968-
GWHAAZE00000001exon2169006421690186-
GWHAAZE00000001exon2169099021691111-
GWHAAZE00000001exon2169120521691376-
GWHAAZE00000001exon2169172221691841-
GWHAAZE00000001exon2169251921692590-
GWHAAZE00000001exon2169267721692784-
GWHAAZE00000001exon2169334821693486-
GWHAAZE00000001exon2169399921694102-
GWHAAZE00000001exon2169464221694754-
GWHAAZE00000001exon2169503321695163-
GWHAAZE00000001exon2169529821695447-
GWHAAZE00000001exon2169595421696129-
GWHAAZE00000001exon2169875621699133-
GWHAAZE00000001CDS2169875621699133-
GWHAAZE00000001CDS2169595421696129-
GWHAAZE00000001CDS2169529821695447-
GWHAAZE00000001CDS2169503321695163-
GWHAAZE00000001CDS2169464221694754-
GWHAAZE00000001CDS2169399921694102-
GWHAAZE00000001CDS2169334821693486-
GWHAAZE00000001CDS2169267721692784-
GWHAAZE00000001CDS2169251921692590-
GWHAAZE00000001CDS2169172221691841-
GWHAAZE00000001CDS2169120521691376-
GWHAAZE00000001CDS2169099021691111-
GWHAAZE00000001CDS2169006421690186-
GWHAAZE00000001CDS2168982021689968-
GWHAAZE00000001CDS2168919321689255-
GWHAAZE00000001CDS2168893921689002-
GWHAAZE00000001CDS2168817421688309-
GWHAAZE00000001CDS2168799821688071-
GWHAAZE00000001CDS2168669721686728-
GWHAAZE00000001CDS2168608921686159-
GWHAAZE00000001CDS2168532221685512-
Transcript Sequence

Network for GWHGAAZE001009

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16486.6ArgoN1042281.80E-27
PF08699.11ArgoL12402876.50E-20
PF02170.23PAZ3074012.10E-18
PF16488.6ArgoL23974364.30E-10
PF02171.18Piwi5437986.50E-78
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11593ELF2C, AGO Axon regeneration map04361

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.233
SRR3591709Stem0.052
SRR3591710White floral bud0.032
SRR3591711White flower0.035
SRR3591712Green floral bud0.206
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 1.784
SRR8316896Juvenile bud stage 2.195
SRR8316897Juvenile bud stage 0.646
SRR8316894Third green stage 0.416
SRR8316900Third green stage 0.910
SRR8316901Third green stage 1.065
SRR8316898Complete white stage 0.009
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.210
SRR6706287Light intensity 50%0.319
SRR6706288Light intensity 20%0.268
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.559
CNS0095593Slightly white alabastrum(diploid) 20.840
CNS0095594Slightly white alabastrum(diploid) 31.788
CNS0095595Whole white alabastrum(diploid) 21.049
CNS0095596Whole white alabastrum(diploid) 30.964
CNS0095597Whole white alabastrum(diploid) 40.841
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.013
CNS0095601Golden flower (diploid) 10.027
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.026
CNS0095604Slightly white alabastrum(tetraploid) 11.914
CNS0095605Slightly white alabastrum(tetraploid) 21.851
CNS0095606Slightly white alabastrum(tetraploid) 30.194
CNS0095607Whole white alabastrum(tetraploid) 11.271
CNS0095608Whole white alabastrum(tetraploid) 20.468
CNS0095609Whole white alabastrum(tetraploid) 30.793
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.045
CNS0095612Silvery flower (tetraploid) 30.089
CNS0095613Golden flower (tetraploid) 10.015
CNS0095614Golden flower (tetraploid) 20.027
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 11.460
CRR073298Stem 20.977
CRR073299Stem 31.268
CRR073300Leaf 10.357
CRR073301Leaf 20.328
CRR073302Leaf 30.321
CRR073303Juvenile bud 10.119
CRR073304Juvenile bud 20.253
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.016
CRR073308Third green 30.019
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.074
CRR073313Silver flowering 20.031
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.122
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.090
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000