Gene detail

Detail information of GWHGAAZE001012

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002271001.1	PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Vitis vinifera]
Swissprot	tr\|Q9FYC7\|PDAT2_ARATH	Putative phospholipid:diacylglycerol acyltransferase 2
trEMBL	tr\|F6GW64\|F6GW64_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44199.1}
TAIR10	AT3G44830.1	Lecithin:cholesterol acyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	21786327	21792327	-
GWHAAZE00000001	mRNA	21786327	21792327	-
GWHAAZE00000001	exon	21786327	21786816	-
GWHAAZE00000001	exon	21787281	21787540	-
GWHAAZE00000001	exon	21788445	21788790	-
GWHAAZE00000001	exon	21789897	21790180	-
GWHAAZE00000001	exon	21790931	21791153	-
GWHAAZE00000001	exon	21791831	21792327	-
GWHAAZE00000001	CDS	21791831	21792327	-
GWHAAZE00000001	CDS	21790931	21791153	-
GWHAAZE00000001	CDS	21789897	21790180	-
GWHAAZE00000001	CDS	21788445	21788790	-
GWHAAZE00000001	CDS	21787281	21787540	-
GWHAAZE00000001	CDS	21786327	21786816	-

Transcript Sequence
>GWHTAAZE001014 ATGGCTTCAATTCTCCGGTTTCGTAAGTTATGCTACCTAGATCCTGCAAAGTGCTCTACATTAGGTTTTGAATCATTTGAAACTCCAAAAGCTGATGACAAACAACCATTTGAAACCCCAAAAGTTGGGAGGAGAGATGAGGGTATTGCTTCTAATGTCGAGAAAGTTTTAGAGAAGCCAAAAAAGAAGAAGATTAAGAAGCAGCCCAAGGATTGGAGATGTGTAGATTACTGCTGTTGGATAATTGGGTATTTGTGTACTACTTGGTGGCTTCTCTTGTTTTTGTACCACTGTTTGCCTGCTAATTTGCCTGGCCTTAAGGTGCATGAACCACCCGGGGCAAGGCTTAAACGCGAAGGCTTGATCGCCCTCCACCCTGTTGTTTTGGTGCCTGGCATTGTCACTGGTGGCCTTGAGCTCTGGGAGGGCAGGGCTTGTGCTGAGGGTCTTTTTCGCAAGCGGCTTTGGGGAGGCAGTTTTATGGAAATCTTCAAGAGGCCATTCTGTTGGTTGGAGCATTTGACATTGCACAACGAAACTGGGCTCGACCCACCAGGCATTAGGGTCCGGGCGGTTCCTGGATTGGTTGCAGCTGATTATTTTGCTCCTGGTTACTTTGTTTGGGCCGTGCTCATTGAAAATTTGGCCCGAATTGGATACGAGGGGAAGAATATGTATATGGCTGCTTATGATTGGAGGCTCTCATTTCAGAATACAGAGATCAGGGACCAATCCCTTAGTAGATTGAAGAGCAAAATTGAGCTTTTGTACTTAACAAATGGTAGCAAGAAAGTGGTGGTGGTGCCCCATTCCATGGGGGCTATCTATTTCCTCCACTTTCTCAAATGGGTTGAATCACCTCTTCCTATGGGTGGTGGTGGCGAGCCCGGTTGGTGTGCAAAACACATAAAATCAATTATGAATATCGGTCCGCCATTTCTTGGTGTTCCCAAGACCGCTAGTAATATATTGTCGTCTGAGGGCCGAGACATTGCTTTTATCAGGGCAATGGCTCCTGGTCTTTTGGATTCTGAGTTTCTTGGGCTTCAAACCCTAGAACATGTAATGAGGGTATCTCGAACATGGGACTCCATCATTTCTTTGGTACCTAAAGGAGGAGAGACAATTTGGGGTAACCTGGATTGGTCCCCAGAAGAAGGGAACATTTGTGATTCAGGCAGGAAAAAATATTTGCAACCCTCTTCAAGGGAAAATAATAGCAACAACGGTGGTATTGGAAAGACAATTTTCCAAGTGAAGCGAGAGCCTACAAAGTACGGAAGGCTGATTTCTTTCGGGAAAGCAGCATCAGAGTTACCTTCTTCACAGCTCCCTACTCTAGGTTCAAAGGACTTTATGCATCAGAGTACCTCGAACAACGCATCGTGTGGAGAGGTATGGACGGAATACGATGAGATGAGCCGAGAAAGCATAAAAAAAGTTGCAGAAAACAAAGCATACTCAGCAAAAACCTTTATAGATCTACTCCGCTTTGTGGCTCCGAAAATGATGAAACGGACAGAGGCTCACTTCTCCCATGGGATAGCTGAGAATCTTGATGATCCAAAGTATGCCCATTACAAGTACTGGTCAAATCCCCTTGAGACCAAATTACCGGATGCTCCTGATATGGAGATTTACTGTTTATATGGTGTGGGAATCCCCACTGAAAGATCATATGTCTACAAGCTGTCGCCTTCTGATCGGTGCAAGAGCATCCCCTTCCGGATCGACAGCTCGGCAGATGGCGGAACTGACGGCAGTGACTGCTTGAAGGGTGGGGTCTACTTTGTGGATGGCGACGAGAGCGTGCCTGTCATGAGCGCTGGCTTCATGTGTGCTAAAGGGTGGAGAGGGAAAACTCGGTTTAATCCCTCGGGAAGTGCAACTTATATACGTGAGTACCGGCACAAGCCCCCGGCGAGCCTGCTCGAAGGTCGGGGTCTTGAGAGCGGGGCCCATGTCGACATCATGGGAAATGTTGGTTTGATCGAGGATGTTCTCCGAGTGGCAGCCGGAGCCACTGGTGCCAAGATAGGCGGCGATAGGATTCATTCGGATATCTTGAGAATGTCCGAGAGAGTAAATATCCGGCTTTGA

Network for GWHGAAZE001012

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02450.16	LCAT	151	659	9.00E-64

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00679	E2.3.1.158	Metabolic pathways	map01100
K00679	E2.3.1.158	Glycerolipid metabolism	map00561

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0008374	molecular_function	O-acyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.299
	SRR3591706	second leaf	6.917
	SRR3591707	mature leaf	3.282
	SRR3591708	Shoot apex	10.282
	SRR3591709	Stem	4.601
	SRR3591710	White floral bud	3.347
	SRR3591711	White flower	3.104
	SRR3591712	Green floral bud	4.503
	SRR3591713	Yellow flower	1.228
SRP173429	SRR8316895	Juvenile bud stage	3.217
	SRR8316896	Juvenile bud stage	3.156
	SRR8316897	Juvenile bud stage	1.273
	SRR8316894	Third green stage	2.022
	SRR8316900	Third green stage	2.926
	SRR8316901	Third green stage	4.067
	SRR8316898	Complete white stage	0.719
	SRR8316899	Complete white stage	2.954
	SRR8316903	Complete white stage	1.035
	SRR8316902	Silver flowering stage	0.630
	SRR8316904	Silver flowering stage	0.503
	SRR8316905	Silver flowering stage	0.163
	SRR8316906	Gold flowering stage	0.564
	SRR8316907	Gold flowering stage	0.942
	SRR8316908	Gold flowering stage	0.736
SRP132670	SRR6706286	Control	4.345
	SRR6706287	Light intensity 50%	4.653
	SRR6706288	Light intensity 20%	5.264
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.875
	CNS0095593	Slightly white alabastrum(diploid) 2	3.858
	CNS0095594	Slightly white alabastrum(diploid) 3	3.241
	CNS0095595	Whole white alabastrum(diploid) 2	3.887
	CNS0095596	Whole white alabastrum(diploid) 3	2.099
	CNS0095597	Whole white alabastrum(diploid) 4	2.559
	CNS0095598	Silvery flower (diploied) 1	4.242
	CNS0095599	Silvery flower (diploied) 2	2.414
	CNS0095600	Silvery flower (diploied) 3	1.907
	CNS0095601	Golden flower (diploid) 1	2.345
	CNS0095602	Golden flower (diploid) 2	1.765
	CNS0095603	Golden flower (diploid) 3	1.123
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.597
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.304
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.103
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.288
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.737
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.405
	CNS0095610	Silvery flower (tetraploid) 1	1.087
	CNS0095611	Silvery flower (tetraploid) 2	1.606
	CNS0095612	Silvery flower (tetraploid) 3	1.708
	CNS0095613	Golden flower (tetraploid) 1	0.411
	CNS0095614	Golden flower (tetraploid) 2	0.767
	CNS0095615	Golden flower (tetraploid) 3	0.242
CRA001975	CRR073297	Stem 1	6.045
	CRR073298	Stem 2	5.835
	CRR073299	Stem 3	6.375
	CRR073300	Leaf 1	5.505
	CRR073301	Leaf 2	5.964
	CRR073302	Leaf 3	5.117
	CRR073303	Juvenile bud 1	4.172
	CRR073304	Juvenile bud 2	2.703
	CRR073305	Juvenile bud 3	6.275
	CRR073306	Third green 1	0.776
	CRR073307	Third green 2	0.449
	CRR073308	Third green 3	0.861
	CRR073309	Second white 1	0.286
	CRR073310	Second white 2	1.137
	CRR073311	Second white 3	0.650
	CRR073312	Silver flowering 1	0.504
	CRR073313	Silver flowering 2	1.085
	CRR073314	Silver flowering 3	0.293
	CRR073315	Gold flowering 1	3.207
	CRR073316	Gold flowering 2	5.796
	CRR073317	Gold flowering 3	1.829
	CRR073318	Tawny withering 1	3.591
	CRR073319	Tawny withering 2	5.133
	CRR073320	Tawny withering 3	4.481