Gene detail

Detail information of GWHGAAZE001017

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010651737.1	0	PREDICTED: uncharacterized protein LOC100243147 [Vitis vinifera]
Swissprot	tr\|F4KBP5\|CHR4_ARATH	6E-12	Protein CHROMATIN REMODELING 4 {ECO:0000303\|PubMed:16547115}
trEMBL	tr\|F6GW59\|F6GW59_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44194.1}
TAIR10	AT5G22760.1	0	PHD finger family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	21899207	21912326	-
GWHAAZE00000001	mRNA	21899207	21912326	-
GWHAAZE00000001	exon	21899207	21899826	-
GWHAAZE00000001	exon	21899925	21900248	-
GWHAAZE00000001	exon	21901022	21901525	-
GWHAAZE00000001	exon	21902102	21902130	-
GWHAAZE00000001	exon	21902229	21902701	-
GWHAAZE00000001	exon	21904344	21904468	-
GWHAAZE00000001	exon	21905129	21905423	-
GWHAAZE00000001	exon	21906816	21907944	-
GWHAAZE00000001	exon	21910418	21911128	-
GWHAAZE00000001	exon	21911494	21912326	-
GWHAAZE00000001	CDS	21911494	21912326	-
GWHAAZE00000001	CDS	21910418	21911128	-
GWHAAZE00000001	CDS	21906816	21907944	-
GWHAAZE00000001	CDS	21905129	21905423	-
GWHAAZE00000001	CDS	21904344	21904468	-
GWHAAZE00000001	CDS	21902229	21902701	-
GWHAAZE00000001	CDS	21902102	21902130	-
GWHAAZE00000001	CDS	21901022	21901525	-
GWHAAZE00000001	CDS	21899925	21900248	-
GWHAAZE00000001	CDS	21899207	21899826	-

Transcript Sequence
>GWHTAAZE001019 ATGGAATCTGAATTGGTTCCGAAGGAACGTAGAGGGAGAAAAAGGAGAAGGAAGGATGTTCATAATGGTTTGTTGGAAGGAAAAGATGCGAAGAAGGCGGCTGTTGAGACTAAGAATCTAGGTGTGGAGCCGAGGTTGGCACTGGTGGGGAGATATGTGAAGAAAGAATTTGATGGTAGGGTTTTCCTTGGCAAAGTTGTGTATTATGATACTGGGTTGTATAGAATTGATTATGAGGACGGGGATTGTGAGGATTTGGAGAGCGGTGAAATCAGGGAGCTTCTTGTGAGGGATGAAGAATTTGATCACAAGTTTTTGTTGAAGAAGAAGAAGTTAGATGGATTAGTATCTAAGAAATATGCCAAGGGGAAGGATTTACCAAAGAGAAAGGAAGTGGAATCTGCCATTGTTGATATTGCTGCTGATAGGGTTGAAGCCTCTTCATTGAATGGTGTTAATGGAGTTGATGGACTTCAGGTTGAGGATGATGCTGATTCTTCAAGTTATTTCAGTGAGAGTTCTTGCGACCGAGATATGAGCTCAGAGGCCGAAGCTTCCCTTGTTCCGCCACCACAATTGCCTCCTTCTTCAGGAAATATCGGTGTTTCCGAGGAACATGTTTCTCACCTTTTATCAGTATATAGTTTCTTGAGGTCATTTAGCATTGGACTGTATTTGAGTCCCTTTGGATTGGATGAGTTCGTGGGGTCGCTCAACTGTTCGGTTCCAAACACTTTGTTGGATGCTATTCATGTTGCTCTTATGCGTGCTTTGAGGCGTCATCTTGAAACTCTCTCCTCCGATGTTTCCGAGCTTGCCTCAAAATGCCTGAGGTGCATGGATTGGAGCTTGCTTGATACATTGACTTGGCCGGTTTATGTGGTTCAATATTTGATGATAATGGGGTACGCTGAGGGACTTGAATGGAAAGGATTTTATATTGACGCTCTAGAGAAGGATTACTACAATCTATCTGCTGGTAGGAAGTTAATGATTTTGCAGATCTTGTGTGATGATGTTCTAGACTCTGCAGAGTTAAGAGCAGATATTGAAATGCGAATAGAATCAGAGATGGGGACGGATCCCGATGGAGTTACAGTATCTGCTCCTCAAAGTGGGCCTAGAAGGGTCCATCCAAGATATTCTAAAACTTCTGCTTGCAAGGACCAAGAAACCATGGATATCATGGCAGAAAGCCAGGGGACAAATCTGTCTTTTGACTCGGGTTCTTTGGGTTTTAAAAGTTCTGGACCTGATACTAGGGGTGATGTTGATCACGATGATGATGGTAATGGTGACGAATGCCGGCTTTGTGGTATGGATGGGACATTGCTTTGTTGCGATGGGTGCCCGTCAGCTTACCATTTAAGATGTATAGGCGTGAGCAAAATGTCTATACCAGATGGGGCATGGTATTGTCCAGAATGTACAGCTAACAAGACTGGGCCCACAATTTCAAGGGGAACATTCCTTAGAGGAGCAGAAATATTTGGAGTTGATCCGTATGAGCAAGTCTTTTTGGGTACTTGCAATCATCTACTTGTGCTAAAGGTTTCGATCAATTGTGAACCATGTACTAGATACTACAATCAAAATGACATTTCAAATGTCCTGCAAACACTTTGTTCATCTCCACAGCACATTGCTATGTACTTGGAGATATGCAAAGGAATTTTGCAGTACTGGAAAATCCCAGAAGATCTATTGTTATCCCTGACTGAAACGGCCACAAATTTGGCAAACAAAAAGGAAGGTTTTGAGTGTTCAACTCCCTCCTGTGCTCTCTCTGGTAATGATCTTGATAATGTTCCATCAGTTGTTGAGGGGGAGAACTTTGCTAGTACTGAAAGCACTTCAGAAATCGTGTCAGTTTCATCTCTTGAAAATAATTGTAAAGAAACCGGGCTAACCTTTTTGGACATCAGGACTCAAAATGGCATCCCTAATCAGAATATTAGTGGCACTGCAACTCCAGAAGCTTCCCATAGTCAGAATGTTAAACTTTCTGAAGTGATTAAAGTGGAATCTACCATGTCCATTGGTTCAGTAAAATTGGCCAATCAAATAAAAGAAGCTATTTCTCTTCTTGGTGGAGGTTGCAGAAATTTAGCTGATGATTGCTTTTACACGGGTTCGTCCTTTAAATCTCAGGCATACTTCAATAACTACACCCACGGAGATTTTGCCGCATCTGCTTCTGCAAATCTCGCTATTGTTTCATCCGAAGAAAATAAGGTTTCTGAAAATCATCCTTTGAATAATAACATGAGGAAAGTTATGTCTGCCAATGTTTTGCTCCAAGTTAGAGCGTTCTCATTAGCGGCTGTGCGATTTTTTTGGCCAAATTCCGAAAAGAAGCACGTGGAAGTCCCAAGGGAAAGGTGTGGTTGGTGTCTTTCTTGTAAGGCTCCGGTTACAAGCAAGAAGGGATGCTTGTTAAATGCAGCTGCTTCAAATGCAATTAAAGGGCCTATGAAGATACTTGCTGGTTTTCGTCCTATGATGAATGGAGAGGGAAGTCTTCCCTCAATTGCCACGTATATCATGTTTATGGAGGAGAGTTTATGTGGTCTGACAGTTGGCCCCTTCCTAAGTTCAGATTTTAGAAAACAATGGCGCAACCAAATGGAACAGGCTACAACTTGCAGTGGTGTGAAGAAACTCTTGCTTCAACTGGAGGCACACATTAATATCGTTGCTCTTTCTGGGGACTGGGTTAAACTTGTCGATAATTGGCCTACTGAAACATCTGCCACCCAGAGTGGTGCAAATGTAACCGGATCGACTCAGAAACGTGGGCCTGGTAGAAGGCGTGGTAGGAAAAAATCGGCTATGACTGAAGTCACAGCTGATGATAGTCAAGATATATCGACTGCCTTCATGTGGTGGCGAGGAGGTATTCTATCAAAGCATGTTTTTCAGAAAGGGACCTTACCCCTTTCAATAGCGAAGAAAGCAGCTTGCCAAGGTGGTTCTAGAAAGATACCCAGCATTTATTATGCTGAAGGGTTTGAGATCCCTAGGAGGAACAAACAGATGGTTTGGAGAGCTACAGTTGAGATGAGTAAGACTGCTTCACAGCTTGCTCTTCAGGTCAGGTACCTAGACCATCATGTGAGGTGGAGCGATCTTGTTCGCCCTGAACAGAGTTTCCAGGATGGAAAAGGTCCAGAAACAGAATCCTCTGCTTTTAGAAATGCTTTCATCTGTGATAAAAGAAATGGAGAAAAGAAAATTACTTATGGTGTTGCTTTTGGGAATCAAAAGCATCTTCCCACCCGGGTCATGAAGAATGTCTTAGAAGTAGAGCAATGTGAAGACGGGAAGGAAAAATATTGGTTTTCAGAAACCTACATTCCTTTATATTTGATCAAAGAATATGAAGAAGAAGAAGTGAAGAAAGGGCTTTCTTCATTGGCTAGTAATAGGCCTATGAGTGTATTGTCAAGATTACAGAGAAGGCAGCTGAAGCTTTCCCGTAAAGATATGTTCTTGTACCTTTCGAGGAAGAGGGATAATCTGCATATGTGTTTCTGTGCCTCATGTAAACTCGATGTTTTGATTAGGAATGTGGTGACGTGCGGTGAATGCCAAGGTTATTGTCACGAGCAATGCACAATTAGTTCAGCAATTGGCATGAAGGAGGAAGTTGAATACTCTATCATCTGCAAGGAGTGTCGCAAAGCCAAATCCAAACCCATTACGCAAATTGAGAACAATAAAGAGTCTCCTACTAGCCCTTTGCTCTTGCAAGGCCAAGAACTTCACAGTGCACCACCTGTTACTAAAAGCAGAAGGCAAATTGGTTCTAATAACAACCGGCCACTAGCATATGTTAGAACTGTGGAGCATTGTTCTTCGGAGATAAAACCCACCGTCCCCAATGGTTCCAGTAGTTTGGCAACAAATAACCGGAAAAATATACGTTCTTGGGGTTTGATCTGGAAGAAGAAGGACTGTGACAATACTGGAATTGATTTCCGAATAAAAAACATCCTCCTAAAGAACAATCCAAATATGGATCCACTACCCATTTGCCATCTTTGCCGTAAGGATTATAATTCTGCTCTCATGTATGTTCGCTGTGAAACATGCACAAATTGGTATCATGCTGAAGCTCTCGAACTCGATGAGTCAAAAGTTTTTGACCTTGTAGGATTTAAGTGTTGCAAATGCCGTAGGATAAGATCTCCAGTCTGCCCTTACATGGATGCCAAGGAGAAAACAGCTTTAGAGTCCAAGAAGCTGTACAAGCGGGCTCCAAAGAAAAATATATCAACGGACCCCGATTCTGAAATCATTCATAAGCAACATAAACAACTAAGACATGCCAATCCCGTTTTGCCTGTACAGGATCATGATCATAATCTCTTCTCTCCTTCAGGGGTTGACCGATTAACTGAGTCCAAATCTGAAGTTGACCGGTTTGAGCAAGTAACTGAGCTGAAACCAGAAGCCGATGTTGAATGGAATAACTCCTCTCTTCCTCAGAAGCTACCGGTCCGGAGGCAAATGAAGCGTGAAAACGACTTGGATGGTTCTTCGGCCAATAATCCGTGTATGTTAGAATCGTCGACGCCCTTTTTTGGAGACGCATTGCCTAAAGATGAATCGTCTCTTGGTGTAGAATGGGATATTCCTGTGAACGGGTTTGACGACAATTTGATGTTCGACTATGAAAGTCTCAACTACGAGGACATGGAGTTTGAACCCCAAACCTATTTCTCCTTCACGGAGTTGCTTGCAGATGATGACAATGGACAGGTGGATGGTGTTGATCAATCGGCGGATTTGATGGCGAGTTGGGAGAATAACCCTGAGGAGTATGGGATCGCTTTCCCTACTGAACAGGAACTGAATAATAAAGTGGGACCCAGCATTGATGCAGTCCCTTGTAGTGTGTGCTCTCAGGTGGACCCAGGTCCCAATCTTTCTTGCCAGATTTGTGGGTCCTGCATCCACAGCCAATGCTCACCGTTGGATGAGGAGGAGTTACTATGGGATGGTGGCTGGAGGTGTCTTAACTGCAGGGAGTGGCGGTAG

Network for GWHGAAZE001017

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02791.18	DDT	205	261	6.80E-14
PF15612.7	WHIM1	308	349	1.10E-07
PF00628.30	PHD	435	478	4.50E-09

Protein Sequence

>GWHPAAZE001018
MESELVPKERRGRKRRRKDVHNGLLEGKDAKKAAVETKNLGVEPRLALVGRYVKKEFDGRVFLGKVVYYDTGLYRIDYEDGDCEDLESGEIRELLVRDEEFDHKFLLKKKKLDGLVSKKYAKGKDLPKRKEVESAIVDIAADRVEASSLNGVNGVDGLQVEDDADSSSYFSESSCDRDMSSEAEASLVPPPQLPPSSGNIGVSEEHVSHLLSVYSFLRSFSIGLYLSPFGLDEFVGSLNCSVPNTLLDAIHVALMRALRRHLETLSSDVSELASKCLRCMDWSLLDTLTWPVYVVQYLMIMGYAEGLEWKGFYIDALEKDYYNLSAGRKLMILQILCDDVLDSAELRADIEMRIESEMGTDPDGVTVSAPQSGPRRVHPRYSKTSACKDQETMDIMAESQGTNLSFDSGSLGFKSSGPDTRGDVDHDDDGNGDECRLCGMDGTLLCCDGCPSAYHLRCIGVSKMSIPDGAWYCPECTANKTGPTISRGTFLRGAEIFGVDPYEQVFLGTCNHLLVLKVSINCEPCTRYYNQNDISNVLQTLCSSPQHIAMYLEICKGILQYWKIPEDLLLSLTETATNLANKKEGFECSTPSCALSGNDLDNVPSVVEGENFASTESTSEIVSVSSLENNCKETGLTFLDIRTQNGIPNQNISGTATPEASHSQNVKLSEVIKVESTMSIGSVKLANQIKEAISLLGGGCRNLADDCFYTGSSFKSQAYFNNYTHGDFAASASANLAIVSSEENKVSENHPLNNNMRKVMSANVLLQVRAFSLAAVRFFWPNSEKKHVEVPRERCGWCLSCKAPVTSKKGCLLNAAASNAIKGPMKILAGFRPMMNGEGSLPSIATYIMFMEESLCGLTVGPFLSSDFRKQWRNQMEQATTCSGVKKLLLQLEAHINIVALSGDWVKLVDNWPTETSATQSGANVTGSTQKRGPGRRRGRKKSAMTEVTADDSQDISTAFMWWRGGILSKHVFQKGTLPLSIAKKAACQGGSRKIPSIYYAEGFEIPRRNKQMVWRATVEMSKTASQLALQVRYLDHHVRWSDLVRPEQSFQDGKGPETESSAFRNAFICDKRNGEKKITYGVAFGNQKHLPTRVMKNVLEVEQCEDGKEKYWFSETYIPLYLIKEYEEEEVKKGLSSLASNRPMSVLSRLQRRQLKLSRKDMFLYLSRKRDNLHMCFCASCKLDVLIRNVVTCGECQGYCHEQCTISSAIGMKEEVEYSIICKECRKAKSKPITQIENNKESPTSPLLLQGQELHSAPPVTKSRRQIGSNNNRPLAYVRTVEHCSSEIKPTVPNGSSSLATNNRKNIRSWGLIWKKKDCDNTGIDFRIKNILLKNNPNMDPLPICHLCRKDYNSALMYVRCETCTNWYHAEALELDESKVFDLVGFKCCKCRRIRSPVCPYMDAKEKTALESKKLYKRAPKKNISTDPDSEIIHKQHKQLRHANPVLPVQDHDHNLFSPSGVDRLTESKSEVDRFEQVTELKPEADVEWNNSSLPQKLPVRRQMKRENDLDGSSANNPCMLESSTPFFGDALPKDESSLGVEWDIPVNGFDDNLMFDYESLNYEDMEFEPQTYFSFTELLADDDNGQVDGVDQSADLMASWENNPEEYGIAFPTEQELNNKVGPSIDAVPCSVCSQVDPGPNLSCQICGSCIHSQCSPLDEEELLWDGGWRCLNCREWR

Gene family

Gene family	subfamily
Transcription Factors Family	DDT

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.732
	SRR3591706	second leaf	6.616
	SRR3591707	mature leaf	9.025
	SRR3591708	Shoot apex	7.892
	SRR3591709	Stem	7.431
	SRR3591710	White floral bud	10.322
	SRR3591711	White flower	14.458
	SRR3591712	Green floral bud	10.020
	SRR3591713	Yellow flower	10.759
SRP173429	SRR8316895	Juvenile bud stage	5.366
	SRR8316896	Juvenile bud stage	6.517
	SRR8316897	Juvenile bud stage	3.405
	SRR8316894	Third green stage	3.988
	SRR8316900	Third green stage	8.086
	SRR8316901	Third green stage	8.160
	SRR8316898	Complete white stage	2.078
	SRR8316899	Complete white stage	7.765
	SRR8316903	Complete white stage	6.727
	SRR8316902	Silver flowering stage	3.370
	SRR8316904	Silver flowering stage	7.489
	SRR8316905	Silver flowering stage	2.919
	SRR8316906	Gold flowering stage	8.269
	SRR8316907	Gold flowering stage	7.121
	SRR8316908	Gold flowering stage	9.382
SRP132670	SRR6706286	Control	6.575
	SRR6706287	Light intensity 50%	7.677
	SRR6706288	Light intensity 20%	7.822
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.279
	CNS0095593	Slightly white alabastrum(diploid) 2	3.383
	CNS0095594	Slightly white alabastrum(diploid) 3	3.946
	CNS0095595	Whole white alabastrum(diploid) 2	3.233
	CNS0095596	Whole white alabastrum(diploid) 3	2.600
	CNS0095597	Whole white alabastrum(diploid) 4	3.902
	CNS0095598	Silvery flower (diploied) 1	6.357
	CNS0095599	Silvery flower (diploied) 2	3.822
	CNS0095600	Silvery flower (diploied) 3	13.216
	CNS0095601	Golden flower (diploid) 1	3.666
	CNS0095602	Golden flower (diploid) 2	12.426
	CNS0095603	Golden flower (diploid) 3	11.478
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.075
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.871
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.286
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.511
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.126
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.000
	CNS0095610	Silvery flower (tetraploid) 1	12.934
	CNS0095611	Silvery flower (tetraploid) 2	12.017
	CNS0095612	Silvery flower (tetraploid) 3	11.878
	CNS0095613	Golden flower (tetraploid) 1	5.531
	CNS0095614	Golden flower (tetraploid) 2	10.340
	CNS0095615	Golden flower (tetraploid) 3	14.838
CRA001975	CRR073297	Stem 1	9.004
	CRR073298	Stem 2	8.324
	CRR073299	Stem 3	4.910
	CRR073300	Leaf 1	8.813
	CRR073301	Leaf 2	7.632
	CRR073302	Leaf 3	4.777
	CRR073303	Juvenile bud 1	6.596
	CRR073304	Juvenile bud 2	4.810
	CRR073305	Juvenile bud 3	9.812
	CRR073306	Third green 1	7.205
	CRR073307	Third green 2	4.835
	CRR073308	Third green 3	7.525
	CRR073309	Second white 1	7.105
	CRR073310	Second white 2	7.953
	CRR073311	Second white 3	12.340
	CRR073312	Silver flowering 1	9.518
	CRR073313	Silver flowering 2	7.719
	CRR073314	Silver flowering 3	8.854
	CRR073315	Gold flowering 1	4.603
	CRR073316	Gold flowering 2	7.267
	CRR073317	Gold flowering 3	4.460
	CRR073318	Tawny withering 1	5.675
	CRR073319	Tawny withering 2	5.337
	CRR073320	Tawny withering 3	4.673