Gene detail

Detail information of GWHGAAZE001046

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010048275.1	2.09825E-89	PREDICTED: uncharacterized protein LOC104437089 [Eucalyptus grandis]
Swissprot	tr\|O23530\|SNC1_ARATH	8E-29	Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1
trEMBL	tr\|A0A059CK72\|A0A059CK72_EUCGR	8E-68	Uncharacterized protein {ECO:0000313\|EMBL:KCW78556.1} (Fragment)
TAIR10	AT1G69550.1	3E-41	disease resistance protein (TIR-NBS-LRR class)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	23242129	23243882	+
GWHAAZE00000001	mRNA	23242129	23243882	+
GWHAAZE00000001	exon	23242129	23243749	+
GWHAAZE00000001	exon	23243848	23243882	+
GWHAAZE00000001	CDS	23242129	23243749	+
GWHAAZE00000001	CDS	23243848	23243882	+

Transcript Sequence
>GWHTAAZE001048 ATGTCAAATAAGTTGAAAGTCCTAATCCTCTCGCTTTGCCTTGACCTCACAAGAATTCCTCACTTATCTGCGTTTCCAACTTTAGAGAGGTTGGATCTATCTCATTGTGAGTTACTTTGTAGGCTTGATGGGCTTGAAGAATTAAAATCGTTAAAGTATCTGAATGCATTAGCTTGCCGTTCCCTAGAAAGTCTGCCAGATCTGTCAAAACTAACAAGTTTACAGATATTACACGTTGGAAATTGTGAGAAATTGATTGAGATTCAAGGCCTAGACAGATTGGCATCCTTGGAAGATTTGGATATAAGCGGTTGCGAATCCTTACAAAGTTTGCCAGATTTTTCAAACTTAGAAAAGTTAATTGGATTTGAGTCCTCAGGATGCAAGAAGCTAGTTGAGATTCAAGGACTAGACAGACTGGCATCCTTAGAACATTTGGATATAAGCAATTGCGAATCCTTACAAAGGTTGCCAGATCTTTCGAACTTAGAAAAGTTAACTGGATTTAAGTCCTCAGGGTGCAAGAACCTAGTTGAGATTCAAGGACTAGACAGACTGGCATCCTTAGAACATTTGGATATAAGAGGGTGCGAATCCTTACAAAGGATGCCAGATCTTTCAAACTTAGAAAAGTTAATTGGATTTGACTCCTCAGGGTGCAAGAACCTAGTTGAGATTCAAGGACTAGACAGACTGGCATCCTTAGAACATTTGGATATAAGAGGGTGCGAATCCTTACAAAGGTTGCCAGATCTTTCAAACTTAGAAAAGTTAACTAGATTTGAGTCCTCAAGTTGCGAGAAGCTAGTTGAGATTCAAGGACTAGACAGATTGGCATCCTTAGAACATTTGGATATAAGCTATTGCGAATCCTTACAAAGCTTGCCAGATCTTTCAAACTTAGAAAAGTTAACTAGATTTGAGTCCTCATGGTGCAAGAAGCTAGTTGAGATTCAAGGACTAGACAGATTGGCATCCTTAAAACATTTGGATATATGGTATTGCACATCCTTACAAAGGGTGCCAGATCTTTCAAACTTAGAAAAGTTAACTAGATTTAAGTCCTCAGGGTGTAAGAAGCTAGTGGAGATTCAAGGACTAGACAGATTGGTATCCTTAGAACATTTGGATATAATATGCTGCGAGTCCTTACAAAATTTGCCAGATCTTTCAAACTTAGAAAAGTTAACTAGATTTGTGTCCTTAAGGTGCAAGAAGCTAGTGGAGATTCAAGGACTAGACAGACTGGTATCCTTAGAACATTTGGATATAAGAGGCTGCGAGTCCTTACAAAGTTTGCCAGATCTTTTAAAATTAAAAAAGTTAAGAAGTTTGTTGATTTCGTCATGCGACAAGCTAACTGAGATTCAAGGTCTACACGGATTGGAATCCTTAGAGATTTTAGACATGCATAAATGCATGTCTATTGAGAATTCGCCTGATTTTTCAAACCTTACAAATTTGAAAAAGTTAGATGTTTCTTACTGTGTGAAACTAACTGAGCTCCGGGGACTTGGGGAATTGCAATTCTTAATGAGGTTGCGCATTATTGGATGCGAGTCACTTGCAAATCTACCATATCTGCCAAGCACAACGATACAAAAGGATTCTGAAGACAAAGCAGAATCATCGTATATATTACCTATTGAGTGGTGA

Network for GWHGAAZE001046

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0006

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13306.7	LRR_5	59	167	0.24
PF00560.34	LRR_1	234	251	1
PF00560.34	LRR_1	280	297	1.2
PF00560.34	LRR_1	418	437	1.5

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.504
	SRR3591706	second leaf	4.347
	SRR3591707	mature leaf	5.946
	SRR3591708	Shoot apex	4.488
	SRR3591709	Stem	8.961
	SRR3591710	White floral bud	0.761
	SRR3591711	White flower	1.645
	SRR3591712	Green floral bud	1.408
	SRR3591713	Yellow flower	1.342
SRP173429	SRR8316895	Juvenile bud stage	3.190
	SRR8316896	Juvenile bud stage	3.321
	SRR8316897	Juvenile bud stage	5.069
	SRR8316894	Third green stage	1.951
	SRR8316900	Third green stage	3.136
	SRR8316901	Third green stage	3.171
	SRR8316898	Complete white stage	1.598
	SRR8316899	Complete white stage	5.820
	SRR8316903	Complete white stage	4.044
	SRR8316902	Silver flowering stage	2.794
	SRR8316904	Silver flowering stage	4.840
	SRR8316905	Silver flowering stage	2.074
	SRR8316906	Gold flowering stage	5.486
	SRR8316907	Gold flowering stage	5.648
	SRR8316908	Gold flowering stage	7.056
SRP132670	SRR6706286	Control	0.897
	SRR6706287	Light intensity 50%	1.128
	SRR6706288	Light intensity 20%	1.111
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.735
	CNS0095593	Slightly white alabastrum(diploid) 2	3.977
	CNS0095594	Slightly white alabastrum(diploid) 3	2.784
	CNS0095595	Whole white alabastrum(diploid) 2	2.330
	CNS0095596	Whole white alabastrum(diploid) 3	1.603
	CNS0095597	Whole white alabastrum(diploid) 4	2.794
	CNS0095598	Silvery flower (diploied) 1	2.880
	CNS0095599	Silvery flower (diploied) 2	1.386
	CNS0095600	Silvery flower (diploied) 3	3.784
	CNS0095601	Golden flower (diploid) 1	1.851
	CNS0095602	Golden flower (diploid) 2	3.853
	CNS0095603	Golden flower (diploid) 3	3.298
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.866
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.333
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.465
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.625
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.465
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.777
	CNS0095610	Silvery flower (tetraploid) 1	10.112
	CNS0095611	Silvery flower (tetraploid) 2	8.498
	CNS0095612	Silvery flower (tetraploid) 3	8.531
	CNS0095613	Golden flower (tetraploid) 1	5.743
	CNS0095614	Golden flower (tetraploid) 2	8.318
	CNS0095615	Golden flower (tetraploid) 3	11.441
CRA001975	CRR073297	Stem 1	1.683
	CRR073298	Stem 2	1.703
	CRR073299	Stem 3	0.201
	CRR073300	Leaf 1	1.880
	CRR073301	Leaf 2	1.972
	CRR073302	Leaf 3	0.192
	CRR073303	Juvenile bud 1	0.105
	CRR073304	Juvenile bud 2	0.090
	CRR073305	Juvenile bud 3	0.595
	CRR073306	Third green 1	0.236
	CRR073307	Third green 2	0.090
	CRR073308	Third green 3	0.024
	CRR073309	Second white 1	0.048
	CRR073310	Second white 2	0.303
	CRR073311	Second white 3	0.176
	CRR073312	Silver flowering 1	0.125
	CRR073313	Silver flowering 2	0.067
	CRR073314	Silver flowering 3	0.030
	CRR073315	Gold flowering 1	0.102
	CRR073316	Gold flowering 2	0.452
	CRR073317	Gold flowering 3	0.066
	CRR073318	Tawny withering 1	1.233
	CRR073319	Tawny withering 2	2.140
	CRR073320	Tawny withering 3	1.834