Detail information of GWHGAAZE001051


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008384409.11.55118E-46PREDICTED: protein HIRA-like isoform X1 [Malus domestica]
Swissprottr|Q652L2|HIRA_ORYSJ2E-46Protein HIRA
trEMBLtr|U5G0X0|U5G0X0_POPTR2E-46Transducin family protein {ECO:0000313|EMBL:ERP57108.1}
TAIR10AT3G44530.18E-40homolog of histone chaperone HIRA

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2341835823421618+
GWHAAZE00000001mRNA2341835823421618+
GWHAAZE00000001exon2341835823418465+
GWHAAZE00000001exon2342136723421618+
GWHAAZE00000001CDS2341835823418465+
GWHAAZE00000001CDS2342136723421618+
Transcript Sequence

Network for GWHGAAZE001051

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD4037610.00017
PF00400.33WD40671021.80E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.813
SRR3591706second leaf0.845
SRR3591707mature leaf1.128
SRR3591708Shoot apex1.193
SRR3591709Stem3.867
SRR3591710White floral bud2.439
SRR3591711White flower7.882
SRR3591712Green floral bud0.736
SRR3591713Yellow flower10.447
SRP173429 SRR8316895Juvenile bud stage 0.491
SRR8316896Juvenile bud stage 0.367
SRR8316897Juvenile bud stage 0.665
SRR8316894Third green stage 0.188
SRR8316900Third green stage 0.791
SRR8316901Third green stage 1.206
SRR8316898Complete white stage 0.131
SRR8316899Complete white stage 0.843
SRR8316903Complete white stage 0.240
SRR8316902Silver flowering stage1.253
SRR8316904Silver flowering stage1.716
SRR8316905Silver flowering stage0.676
SRR8316906Gold flowering stage 1.971
SRR8316907Gold flowering stage 2.864
SRR8316908Gold flowering stage 1.806
SRP132670SRR6706286Control0.518
SRR6706287Light intensity 50%0.802
SRR6706288Light intensity 20%0.340
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.157
CNS0095593Slightly white alabastrum(diploid) 20.068
CNS0095594Slightly white alabastrum(diploid) 30.120
CNS0095595Whole white alabastrum(diploid) 20.243
CNS0095596Whole white alabastrum(diploid) 30.026
CNS0095597Whole white alabastrum(diploid) 40.261
CNS0095598Silvery flower (diploied) 11.857
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 33.209
CNS0095601Golden flower (diploid) 10.129
CNS0095602Golden flower (diploid) 21.057
CNS0095603Golden flower (diploid) 32.011
CNS0095604Slightly white alabastrum(tetraploid) 10.225
CNS0095605Slightly white alabastrum(tetraploid) 20.149
CNS0095606Slightly white alabastrum(tetraploid) 31.205
CNS0095607Whole white alabastrum(tetraploid) 10.373
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.270
CNS0095610Silvery flower (tetraploid) 14.395
CNS0095611Silvery flower (tetraploid) 22.018
CNS0095612Silvery flower (tetraploid) 35.607
CNS0095613Golden flower (tetraploid) 11.478
CNS0095614Golden flower (tetraploid) 20.223
CNS0095615Golden flower (tetraploid) 31.931
CRA001975CRR073297Stem 11.491
CRR073298Stem 21.153
CRR073299Stem 30.460
CRR073300Leaf 10.620
CRR073301Leaf 20.751
CRR073302Leaf 30.507
CRR073303Juvenile bud 10.382
CRR073304Juvenile bud 20.514
CRR073305Juvenile bud 33.892
CRR073306Third green 10.725
CRR073307Third green 20.380
CRR073308Third green 30.666
CRR073309Second white 11.124
CRR073310Second white 21.075
CRR073311Second white 31.863
CRR073312Silver flowering 14.085
CRR073313Silver flowering 21.362
CRR073314Silver flowering 31.434
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.294
CRR073318Tawny withering 10.078
CRR073319Tawny withering 20.502
CRR073320Tawny withering 30.196