Detail information of GWHGAAZE001072


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010313356.10PREDICTED: F-box/LRR-repeat protein At1g67190 [Solanum lycopersicum]
Swissprottr|Q9ZW88|FBL34_ARATH0F-box/LRR-repeat protein At1g67190
trEMBLtr|K4D9Z3|K4D9Z3_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc11g068350.1.1}
TAIR10AT1G67190.22E-176F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2375646923757740+
GWHAAZE00000001mRNA2375646923757740+
GWHAAZE00000001exon2375646923757740+
GWHAAZE00000001CDS2375646923757740+
Transcript Sequence

Network for GWHGAAZE001072

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12937.8F-box-like2391.90E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.759
SRR3591706second leaf2.365
SRR3591707mature leaf3.639
SRR3591708Shoot apex2.366
SRR3591709Stem2.487
SRR3591710White floral bud3.452
SRR3591711White flower4.679
SRR3591712Green floral bud3.406
SRR3591713Yellow flower3.426
SRP173429 SRR8316895Juvenile bud stage 1.164
SRR8316896Juvenile bud stage 1.320
SRR8316897Juvenile bud stage 0.614
SRR8316894Third green stage 1.026
SRR8316900Third green stage 3.057
SRR8316901Third green stage 1.584
SRR8316898Complete white stage 1.277
SRR8316899Complete white stage 2.771
SRR8316903Complete white stage 2.499
SRR8316902Silver flowering stage1.250
SRR8316904Silver flowering stage1.807
SRR8316905Silver flowering stage0.783
SRR8316906Gold flowering stage 2.472
SRR8316907Gold flowering stage 1.508
SRR8316908Gold flowering stage 3.059
SRP132670SRR6706286Control0.963
SRR6706287Light intensity 50%1.441
SRR6706288Light intensity 20%1.373
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.780
CNS0095593Slightly white alabastrum(diploid) 22.265
CNS0095594Slightly white alabastrum(diploid) 32.726
CNS0095595Whole white alabastrum(diploid) 21.567
CNS0095596Whole white alabastrum(diploid) 32.942
CNS0095597Whole white alabastrum(diploid) 41.402
CNS0095598Silvery flower (diploied) 12.303
CNS0095599Silvery flower (diploied) 22.032
CNS0095600Silvery flower (diploied) 34.192
CNS0095601Golden flower (diploid) 12.639
CNS0095602Golden flower (diploid) 23.406
CNS0095603Golden flower (diploid) 34.684
CNS0095604Slightly white alabastrum(tetraploid) 12.863
CNS0095605Slightly white alabastrum(tetraploid) 22.847
CNS0095606Slightly white alabastrum(tetraploid) 33.805
CNS0095607Whole white alabastrum(tetraploid) 12.749
CNS0095608Whole white alabastrum(tetraploid) 22.282
CNS0095609Whole white alabastrum(tetraploid) 32.327
CNS0095610Silvery flower (tetraploid) 13.601
CNS0095611Silvery flower (tetraploid) 23.837
CNS0095612Silvery flower (tetraploid) 33.769
CNS0095613Golden flower (tetraploid) 12.146
CNS0095614Golden flower (tetraploid) 23.322
CNS0095615Golden flower (tetraploid) 33.801
CRA001975CRR073297Stem 11.978
CRR073298Stem 21.397
CRR073299Stem 31.784
CRR073300Leaf 11.547
CRR073301Leaf 21.270
CRR073302Leaf 30.913
CRR073303Juvenile bud 11.639
CRR073304Juvenile bud 21.454
CRR073305Juvenile bud 30.982
CRR073306Third green 10.733
CRR073307Third green 20.706
CRR073308Third green 30.996
CRR073309Second white 10.429
CRR073310Second white 20.998
CRR073311Second white 31.020
CRR073312Silver flowering 10.791
CRR073313Silver flowering 21.938
CRR073314Silver flowering 31.330
CRR073315Gold flowering 11.179
CRR073316Gold flowering 22.505
CRR073317Gold flowering 32.293
CRR073318Tawny withering 12.560
CRR073319Tawny withering 21.687
CRR073320Tawny withering 32.568