Gene detail

Detail information of GWHGAAZE001073

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009779356.1	0	PREDICTED: transcription factor TGA2 [Nicotiana sylvestris]
Swissprot	tr\|O24160\|TGA21_TOBAC	8E-132	TGACG-sequence-specific DNA-binding protein TGA-2.1
trEMBL	tr\|A0A068UFE7\|A0A068UFE7_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_24 {ECO:0000313\|EMBL:CDP06929.1}
TAIR10	AT1G08320.2	1E-143	bZIP transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	23775245	23782356	+
GWHAAZE00000001	mRNA	23775245	23782356	+
GWHAAZE00000001	exon	23775245	23775331	+
GWHAAZE00000001	exon	23776581	23776625	+
GWHAAZE00000001	exon	23776777	23776836	+
GWHAAZE00000001	exon	23777413	23777490	+
GWHAAZE00000001	exon	23777628	23777670	+
GWHAAZE00000001	exon	23778650	23778921	+
GWHAAZE00000001	exon	23779629	23779850	+
GWHAAZE00000001	exon	23781867	23782009	+
GWHAAZE00000001	exon	23782272	23782356	+
GWHAAZE00000001	CDS	23775245	23775331	+
GWHAAZE00000001	CDS	23776581	23776625	+
GWHAAZE00000001	CDS	23776777	23776836	+
GWHAAZE00000001	CDS	23777413	23777490	+
GWHAAZE00000001	CDS	23777628	23777670	+
GWHAAZE00000001	CDS	23778650	23778921	+
GWHAAZE00000001	CDS	23779629	23779850	+
GWHAAZE00000001	CDS	23781867	23782009	+
GWHAAZE00000001	CDS	23782272	23782356	+

Transcript Sequence
>GWHTAAZE001075 ATGGATCAGATGGCAAGTGATCATAATCCAAGAACAGGAGGGCCATCTCAGGCTCAACCAACTGTCAACAAGCCCACCCAAGAAAAGAGAAAAGGACCTGGTACATCATCAGAGAAAGCACTTGATGCCAAGACACTGAGGCGTTTAGCTCAAAATAGAGAAGCAGCAAGAAAAAGCAGGCTCAGAAAAAAGGCTTATGTGCAGCAACTGGAATCAAGCAGGATAAGGCTAAGTCAGCTGGAGCAAGACCTTCATCGAGCTCGATCTCAGGGATTGCTCTTGGGAGGAGGCGGCGGCGGCAACATCAGCTCTGGTGCAGCAATATTTGACATGGAATATTCTAGGTGGCTGGACGACGATCACCGCCACATGGCCGAGCTGCGGACCGGGCTACACGCACATTTATCCGATAGTGATCTGAGGTTGATTGTTGATGGATATATTGCGCATTATGACGAAATTTTCCGGCTAAAGGGAGTCACGACCAAAACCGATGTCTTCCACCTCATAACTGGAATGTGGGCCACTCCGGCTGAGCGTTGCTTCCTCTGGATGGGCGGCTTCCGCCCGTCCGAGCTCATCAAGATGTTAGTAGGGCAACTGGACCCTTTAACGGAGCAGCAAGTAATGGGGATTTACAACCTCCAGCATTCTTCCCAGCAGGCTGAGGAGGCACTCTCTCAAGGCTTCGAACAACTGCAGCAGTCTCTCATCGAAACCATCGCTGGCGGCTCAGGCAACGACGGCATGCACCATATGGTTGTTGCTCTCGGCAAGCTCACCAATCTTGAAGGTTTCGTTTGCCAGGCTGATAATTTAAGACAACAAACCCTTCACCAACTACATCGGATTTTGACGGTTCGACAAGCAGCAAGATGTTTTTTGGTGATTGGCGAATACTATGGCCGACTACGAGCCCTAAGTTCCCTTTGGGCATCGCGACCGCGAGAGAATTTGATGAGTGAAGACTCTTGCCAAACAACTACAGACTTGCAAATGGTGCAATCTTCACAGAACCATTTTGTAAACTTTTGA

Network for GWHGAAZE001073

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00170.22	bZIP_1	43	84	4.50E-08
PF14144.7	DOG1	123	197	1.50E-30

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
K14431	TGA	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0006351	biological_process	transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.668
	SRR3591706	second leaf	0.290
	SRR3591707	mature leaf	0.367
	SRR3591708	Shoot apex	0.077
	SRR3591709	Stem	9.964
	SRR3591710	White floral bud	4.131
	SRR3591711	White flower	2.782
	SRR3591712	Green floral bud	5.237
	SRR3591713	Yellow flower	0.771
SRP173429	SRR8316895	Juvenile bud stage	6.423
	SRR8316896	Juvenile bud stage	7.605
	SRR8316897	Juvenile bud stage	3.105
	SRR8316894	Third green stage	1.507
	SRR8316900	Third green stage	4.689
	SRR8316901	Third green stage	5.545
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.533
	SRR8316903	Complete white stage	0.050
	SRR8316902	Silver flowering stage	0.180
	SRR8316904	Silver flowering stage	0.197
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.039
	SRR8316907	Gold flowering stage	1.051
	SRR8316908	Gold flowering stage	0.304
SRP132670	SRR6706286	Control	4.832
	SRR6706287	Light intensity 50%	5.893
	SRR6706288	Light intensity 20%	4.424
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.040
	CNS0095593	Slightly white alabastrum(diploid) 2	3.922
	CNS0095594	Slightly white alabastrum(diploid) 3	9.990
	CNS0095595	Whole white alabastrum(diploid) 2	7.071
	CNS0095596	Whole white alabastrum(diploid) 3	5.524
	CNS0095597	Whole white alabastrum(diploid) 4	8.337
	CNS0095598	Silvery flower (diploied) 1	0.652
	CNS0095599	Silvery flower (diploied) 2	1.444
	CNS0095600	Silvery flower (diploied) 3	0.803
	CNS0095601	Golden flower (diploid) 1	0.807
	CNS0095602	Golden flower (diploid) 2	0.643
	CNS0095603	Golden flower (diploid) 3	0.552
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.030
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.391
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.295
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.733
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.766
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.584
	CNS0095610	Silvery flower (tetraploid) 1	1.225
	CNS0095611	Silvery flower (tetraploid) 2	0.782
	CNS0095612	Silvery flower (tetraploid) 3	1.255
	CNS0095613	Golden flower (tetraploid) 1	0.198
	CNS0095614	Golden flower (tetraploid) 2	0.489
	CNS0095615	Golden flower (tetraploid) 3	0.636
CRA001975	CRR073297	Stem 1	17.297
	CRR073298	Stem 2	13.262
	CRR073299	Stem 3	20.122
	CRR073300	Leaf 1	3.053
	CRR073301	Leaf 2	3.440
	CRR073302	Leaf 3	3.203
	CRR073303	Juvenile bud 1	1.338
	CRR073304	Juvenile bud 2	1.728
	CRR073305	Juvenile bud 3	0.027
	CRR073306	Third green 1	0.738
	CRR073307	Third green 2	1.638
	CRR073308	Third green 3	0.866
	CRR073309	Second white 1	0.109
	CRR073310	Second white 2	0.118
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.537
	CRR073313	Silver flowering 2	0.139
	CRR073314	Silver flowering 3	0.180
	CRR073315	Gold flowering 1	0.739
	CRR073316	Gold flowering 2	0.489
	CRR073317	Gold flowering 3	0.288
	CRR073318	Tawny withering 1	10.150
	CRR073319	Tawny withering 2	8.801
	CRR073320	Tawny withering 3	8.100