Gene detail

Detail information of GWHGAAZE001079

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004293083.1	0	PREDICTED: proteinaceous RNase P 3-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|F4JKB6\|PRRP3_ARATH	2E-170	Proteinaceous RNase P 3
trEMBL	tr\|A0A061GVN4\|A0A061GVN4_THECC	0	Aceous RNase P 3 isoform 2 {ECO:0000313\|EMBL:EOY33488.1}
TAIR10	AT2G16650.1	5E-125	proteinaceous RNase P 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	24092137	24096032	+
GWHAAZE00000001	mRNA	24092137	24096032	+
GWHAAZE00000001	exon	24092137	24092456	+
GWHAAZE00000001	exon	24093304	24093907	+
GWHAAZE00000001	exon	24094876	24094957	+
GWHAAZE00000001	exon	24095090	24095267	+
GWHAAZE00000001	exon	24095750	24095870	+
GWHAAZE00000001	exon	24095973	24096032	+
GWHAAZE00000001	CDS	24092137	24092456	+
GWHAAZE00000001	CDS	24093304	24093907	+
GWHAAZE00000001	CDS	24094876	24094957	+
GWHAAZE00000001	CDS	24095090	24095267	+
GWHAAZE00000001	CDS	24095750	24095870	+
GWHAAZE00000001	CDS	24095973	24096032	+

Transcript Sequence
>GWHTAAZE001081 ATGGAGATGACAAACCAATCAAACCCCTCAAAATACAACAACAAGAAGATCAAGAAGAAAAACCAAACCCCATTCTCCAAATTCCGCTTCGACCTCGACAATTGCACCAAGAGAACCGACCTCCATGGCGCAATTTCTCTCTACGAATCGGCAAATTCGCTCGACATTCGCCTCAATCAGCACCACTTCAATTCCTTCCTCTACATTTGTTCCAATTCCGCCTCAGATTCATCCGCTATCGAGTACGGATTCCGCATATTCGACCACATGTTGACCAACGGTGTCCTTCCCAACGAGGCCACCATCACCGCCGTCGCCAGGCTCGCTGTGGCAAAAGGTGACGGCGATTTGGCCTTCGTGTTGGTGAAGGATTTGGGGAAATACAAGGCTTTGCCGAAGATTCGGTCTTACTGTCCAGCCTTGTTCTGTTTCTGTAAGAAATTGGAGGCTGAAAAGGCTTATTCGGTAGAGGAGCATATGAATTCGGTGGGGTTGCAAGCAGAGGAACCGGAGCTTGCTGCATTGCTGAAAGTGAGTGTGGATTGTGGGAGACAAGAGAAGGTGTATGCATATTTGCATAAATTGAGAGGGGCGCTGAGGTGTGTTAGTGATTCAACGTCAGAGATAATTGAGGGTTGGTTTGAGAGGGAAATGGCTGAGGTGGTGGGTTTGGAGGACTGGGACGAGGTTGATGTGAAAGAATTGGCTTTGAAGAATGGAGGTGGGTGGCATGGATTTGGGTGGCTTGGAAAGGGGAAGTGGGTTGTTAAGAGATCTAGCGTTGATTCAAGCGGGTTTTGTTGTTCTTGCGGGGAGCAGTTGGTTTGTGTTGATATTGATAGAGTGGAGACTGAGAAATTTGCTCAGTCAGTGGCTTCCTTGGCCATGAAAAGAGAGGTTCAGTCCAATTTTACTGAATTTCAGAACTGGCTGGACGAGCATTCTGAATATGAAGCTATTGTGGATGGGGCAAACATTGGGCTCTATCAGCAGAACTTTGCAGAAGAGCAGCTTGAAGCTGTTGTGAAAGAACTGTATAATAGGAGCAAGAAATGGCCTCTTGTTGTGCTCCACAGTAAACGTATTCGTACACTTCTTGAGAACTCTGCCAATAGACAGCTGATCGAGAAATGGATGAATGAAGGAGTTCTGTATGGAACACCTTTTGGATCAAACGATGACTGGTATTGGCTTTATGCAGCAGTAAAGCTTAAGTGTTTGATTGTGACTAATGATGAAATGAGGGATCACATTTTTGAACTCCTTGGTAACAGTTTTTTTCTCAAGTGGAAAGAACGACATCAAAATCAGAGAAATGAATTCCATCAAGTCATTTGCTTTGCTGTTGCAGTTAAACTGAAATAA

Network for GWHGAAZE001079

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17177.5	PPR_long	16	219	2.30E-78
PF16953.6	PRORP	261	443	7.60E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18213	PRORP	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.948
	SRR3591706	second leaf	2.156
	SRR3591707	mature leaf	1.285
	SRR3591708	Shoot apex	5.189
	SRR3591709	Stem	2.314
	SRR3591710	White floral bud	2.660
	SRR3591711	White flower	5.147
	SRR3591712	Green floral bud	5.761
	SRR3591713	Yellow flower	2.473
SRP173429	SRR8316895	Juvenile bud stage	3.928
	SRR8316896	Juvenile bud stage	5.398
	SRR8316897	Juvenile bud stage	3.215
	SRR8316894	Third green stage	2.156
	SRR8316900	Third green stage	5.816
	SRR8316901	Third green stage	3.706
	SRR8316898	Complete white stage	0.787
	SRR8316899	Complete white stage	6.069
	SRR8316903	Complete white stage	1.316
	SRR8316902	Silver flowering stage	1.149
	SRR8316904	Silver flowering stage	2.241
	SRR8316905	Silver flowering stage	0.942
	SRR8316906	Gold flowering stage	3.254
	SRR8316907	Gold flowering stage	2.680
	SRR8316908	Gold flowering stage	4.263
SRP132670	SRR6706286	Control	7.375
	SRR6706287	Light intensity 50%	7.385
	SRR6706288	Light intensity 20%	8.419
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.065
	CNS0095593	Slightly white alabastrum(diploid) 2	3.122
	CNS0095594	Slightly white alabastrum(diploid) 3	3.784
	CNS0095595	Whole white alabastrum(diploid) 2	2.735
	CNS0095596	Whole white alabastrum(diploid) 3	2.895
	CNS0095597	Whole white alabastrum(diploid) 4	2.100
	CNS0095598	Silvery flower (diploied) 1	2.809
	CNS0095599	Silvery flower (diploied) 2	2.286
	CNS0095600	Silvery flower (diploied) 3	3.565
	CNS0095601	Golden flower (diploid) 1	2.189
	CNS0095602	Golden flower (diploid) 2	3.313
	CNS0095603	Golden flower (diploid) 3	2.699
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.368
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.412
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.163
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.174
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.775
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.592
	CNS0095610	Silvery flower (tetraploid) 1	4.532
	CNS0095611	Silvery flower (tetraploid) 2	3.135
	CNS0095612	Silvery flower (tetraploid) 3	2.990
	CNS0095613	Golden flower (tetraploid) 1	1.744
	CNS0095614	Golden flower (tetraploid) 2	3.515
	CNS0095615	Golden flower (tetraploid) 3	1.379
CRA001975	CRR073297	Stem 1	6.153
	CRR073298	Stem 2	5.886
	CRR073299	Stem 3	6.050
	CRR073300	Leaf 1	6.513
	CRR073301	Leaf 2	4.861
	CRR073302	Leaf 3	7.414
	CRR073303	Juvenile bud 1	5.008
	CRR073304	Juvenile bud 2	3.228
	CRR073305	Juvenile bud 3	4.664
	CRR073306	Third green 1	0.784
	CRR073307	Third green 2	0.374
	CRR073308	Third green 3	0.738
	CRR073309	Second white 1	2.225
	CRR073310	Second white 2	2.688
	CRR073311	Second white 3	2.489
	CRR073312	Silver flowering 1	0.830
	CRR073313	Silver flowering 2	1.975
	CRR073314	Silver flowering 3	1.177
	CRR073315	Gold flowering 1	2.252
	CRR073316	Gold flowering 2	3.884
	CRR073317	Gold flowering 3	2.905
	CRR073318	Tawny withering 1	3.398
	CRR073319	Tawny withering 2	3.774
	CRR073320	Tawny withering 3	4.591