Gene detail

Detail information of GWHGAAZE001081

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008237351.1	PREDICTED: protein HIRA [Prunus mume]
Swissprot	tr\|Q652L2\|HIRA_ORYSJ	Protein HIRA
trEMBL	tr\|M5VVF7\|M5VVF7_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ00903.1}
TAIR10	AT3G44530.1	homolog of histone chaperone HIRA

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	24173295	24183991	-
GWHAAZE00000001	mRNA	24173295	24183991	-
GWHAAZE00000001	exon	24183884	24183991	-
GWHAAZE00000001	exon	24182397	24182672	-
GWHAAZE00000001	exon	24180454	24180705	-
GWHAAZE00000001	exon	24179715	24180112	-
GWHAAZE00000001	exon	24179053	24179275	-
GWHAAZE00000001	exon	24178277	24178849	-
GWHAAZE00000001	exon	24177030	24177240	-
GWHAAZE00000001	exon	24176354	24176594	-
GWHAAZE00000001	exon	24175559	24175681	-
GWHAAZE00000001	exon	24174326	24174434	-
GWHAAZE00000001	exon	24173295	24173552	-
GWHAAZE00000001	CDS	24183884	24183991	-
GWHAAZE00000001	CDS	24182397	24182672	-
GWHAAZE00000001	CDS	24180454	24180705	-
GWHAAZE00000001	CDS	24179715	24180112	-
GWHAAZE00000001	CDS	24179053	24179275	-
GWHAAZE00000001	CDS	24178277	24178849	-
GWHAAZE00000001	CDS	24177030	24177240	-
GWHAAZE00000001	CDS	24176354	24176594	-
GWHAAZE00000001	CDS	24175559	24175681	-
GWHAAZE00000001	CDS	24174326	24174434	-
GWHAAZE00000001	CDS	24173295	24173552	-

Transcript Sequence
>GWHTAAZE001083 ATGATTGCAGAAAAGCCCATTTGGGTTAGGCATGAGGGTTTGCAGATATTCTCCATTGATGTTCAGCCTGGTGGGCTTAGATTTGCCACTGGTGGTGGTGATCACAAGGTTCGAATTTGGAGCACAAAATATATTGGCAGGGACATAGGAATTCAAGATGCAAAATCGCAACTACTAGCGACCATTCGGGATCATTTTGGGTCGGTCAACTGCGTTAGGTGGGCTAAACATGGTCGGTATTTGGCATCGGGGTCCGATGATCAGGTGATTCAAATTCATGAGAGGAAACCTGGTTCGGGAACAGCTGAATTTGGTAGCGGAGAAGCTCCAGATGTCGAGAATTGGAAAGTTGCCATGACTTTGAGAGGACACACTGCAGATGTGGTGGATCTTAATTGGTCTCCGGATGACTTAATACTGGCTAGTGGCAGTTTGGATAATACTATCCATATATGGGATATGAGGAACGGCATTTGCACGGCTGTTCTCAGAGGTCACTCCAGCCTGGTTAAAGGGGTTACATGGGATCCCATCGGTTCCTTCATAGCAAGTCAATCAGATGATAAGACTGTCATTATTTGGCGAACAAGTGACTGGAGCCTTGTTCATAGGACTGATGGACACTGGGCAAAATCTCTTGGATCGACTTTCTTTAGACGACTTGGCTGGTCACCTTGTGGCCATTTTATAACGACCACTCATGGGTTCCAGAAACCGAGGCATTCTGCACCTGTTCTCGAGAGAGGAGAGTGGTCTGCAACTTTTGACTTTTTAGGACACAATGCCCCAATTATTGTGGTGAAGTTTAATCATTCAATGTTCAGGCGGAACCCGTCCAATGCTCAGGAAGTAAAATCTGCGTCTGTTGGTTGGACTAATGGGTCTTCTAAGACTGGGGGGAAAGAATCACAGCCTTATAATATTATTGCAATAGGGAGTCAGGACCGCACCATAACTGTGTGGACAACTGCAAGCGCTCGTCCTCTTTTTGTGGCTAAACATTTCTTTTCTCAAAGTGTTGTCGATTTATCCTGGAGTCCCGATGGTTTTTCACTATATGCATGTTCCTTGGATGGGACTGTAGCTGCCTTCCATTTCAAAGTGAGCGAAATTGGTCAAAGGCTAACCGATGCTGAATTGGATGATTTAAAGAGAAATCGTTATGGTGATGTAAGAGGCCGGCAATCAAACTTGGCAGAAAGTCCAGCACAGTTGTTGCTTGAAGCTGCAGCTGCTAAGCAAACCATCACCCAAAAAGTGATTGTCCCAATTCGAGAATCAGTTGGTGTGTCAGGTCAACAGGAAAATATCTCCGATGTTGTGCAGTCTCAGGTTGTTGATTTTCCTCTTAATTCATCAGATCGATTAAAGGATGTTGATGGTGGTGTTAAGGAAGTTAGTGTAAAGAAAGCAATAGGTGGGACCACTGATAGTAAGGAGCATTATGGAGTCACTGCTAAGGCTACTATTAGTGAAAGTCTGGTGATCGAGAAGGTTCCAGTTTCTACAGCTAGAGATGGCAGCATTACCGTTCAGCAGATAGGAAGAACCTCGAAGAATATGGGTTCTTTGGTTGCTTGTAGTAATCTTTCGATCAGGGTTTTTGATAAGAAAGGGGAAGATGAAATGCCAGTTTGTTTGGAAGCTCATCCTAGAGAAGAGGCTGCTACTGATATTATTGGGGGAGGTGCACATGTGATGAACGAAACAGAAATTTCTTGTTCGAGAGGAAATCAAATTCTTTGGTCCGATAGGATCTCTGGCAAGGTCACTGTTTTGGCTGGAAATCCTAACATCTGGGCTGTCGGGTGTGAAGATGGATGCCTTCAGATATACACAAAGTGTGGGAGAAGAGCCTTGCCGACCATGATGATGGGATCCACAGCAGTATTTATAGATTGTGATGATTCTTGGAAGTTTTTGCTTGTCACTAGGAAGGGATCCTTGTACATATGGGATCTCTTCAACCGGAAATGCCTCCTTCATGATTCATTGGCTTCTTTGATAACTTTGGATCCAAATTCAAGTAGTACAGATGAAGGCACGATAAAAGTCATATCAGCGAAGTTATCAAAATCTGGTTTTCCTCTTGTTTTATTGGCGACTCGACATGCGTTCCTGTATGATATGAGCCTCATGTGTTGGCTGAGGGTCGCTGATGAGTGCTTCCCGGCTTCAAATTTTTCAAGCTCTTGGAATTTGGGTTCGATTCACAGCGGTGAACTCGCTGGCTTGCAGGTGGATGTCAGGAAGTTCTTGGCTAGAAAACCAAGTTTGGGCAGAGTGAGTGATGATGGAGTGCAGACGCGTGGTCATTTGGAAGCTCAGTTGGCATCTGCACTGGCTTTGAAATCCCCAGATGAATATCGCCATTCTCTTGTATCTTACATTCGCTATCTAGCTAGAGAAGCAGATGAATCAAGATTACGAGAAATTTGTGAGAGCTTTCTCGGACCACCAACAGGGATGGCTGATGCTACCACCTCCTATCTCAAAACCCATCATGGGATCCTTGGAATGAAAAAGCAGAAACTCCTTAGAGAAGATATTCTTCCGGCAATGGCATCAAACCGAAAAGTTCAGCGCTTACTCAATGAGTTTATGGATCTCTCCGAACACCAAACAACAACCGAGTTAACCAATCCCCATCATAAAAACCTAAATCTCACACCCCCGCGGACCAATCAAACGGACTCCACCCTGCCCACAAATAAACCAATGGAAACCGACGAAAATAACTGTGCCACTAGAAAAAGATCAATTGGAATGTGA

Network for GWHGAAZE001081

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0230

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	13	41	0.052
PF00400.33	WD40	57	92	8.30E-05
PF00400.33	WD40	119	153	3.50E-07
PF00400.33	WD40	159	194	3.60E-05
PF07569.12	Hira	616	815	3.60E-48

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.867
	SRR3591706	second leaf	3.349
	SRR3591707	mature leaf	3.858
	SRR3591708	Shoot apex	8.968
	SRR3591709	Stem	8.852
	SRR3591710	White floral bud	33.446
	SRR3591711	White flower	95.278
	SRR3591712	Green floral bud	5.142
	SRR3591713	Yellow flower	139.050
SRP173429	SRR8316895	Juvenile bud stage	5.153
	SRR8316896	Juvenile bud stage	6.258
	SRR8316897	Juvenile bud stage	3.813
	SRR8316894	Third green stage	2.909
	SRR8316900	Third green stage	5.572
	SRR8316901	Third green stage	5.920
	SRR8316898	Complete white stage	4.629
	SRR8316899	Complete white stage	7.156
	SRR8316903	Complete white stage	8.244
	SRR8316902	Silver flowering stage	15.004
	SRR8316904	Silver flowering stage	17.748
	SRR8316905	Silver flowering stage	7.810
	SRR8316906	Gold flowering stage	28.008
	SRR8316907	Gold flowering stage	40.702
	SRR8316908	Gold flowering stage	15.166
SRP132670	SRR6706286	Control	7.321
	SRR6706287	Light intensity 50%	6.531
	SRR6706288	Light intensity 20%	7.196
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.921
	CNS0095593	Slightly white alabastrum(diploid) 2	4.469
	CNS0095594	Slightly white alabastrum(diploid) 3	3.717
	CNS0095595	Whole white alabastrum(diploid) 2	4.057
	CNS0095596	Whole white alabastrum(diploid) 3	2.613
	CNS0095597	Whole white alabastrum(diploid) 4	3.196
	CNS0095598	Silvery flower (diploied) 1	8.495
	CNS0095599	Silvery flower (diploied) 2	5.239
	CNS0095600	Silvery flower (diploied) 3	23.161
	CNS0095601	Golden flower (diploid) 1	6.168
	CNS0095602	Golden flower (diploid) 2	15.589
	CNS0095603	Golden flower (diploid) 3	15.925
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.975
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.057
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.667
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.097
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.725
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.704
	CNS0095610	Silvery flower (tetraploid) 1	12.730
	CNS0095611	Silvery flower (tetraploid) 2	11.090
	CNS0095612	Silvery flower (tetraploid) 3	20.440
	CNS0095613	Golden flower (tetraploid) 1	6.857
	CNS0095614	Golden flower (tetraploid) 2	6.669
	CNS0095615	Golden flower (tetraploid) 3	6.147
CRA001975	CRR073297	Stem 1	12.863
	CRR073298	Stem 2	11.691
	CRR073299	Stem 3	7.788
	CRR073300	Leaf 1	12.965
	CRR073301	Leaf 2	13.956
	CRR073302	Leaf 3	7.458
	CRR073303	Juvenile bud 1	8.893
	CRR073304	Juvenile bud 2	5.202
	CRR073305	Juvenile bud 3	12.018
	CRR073306	Third green 1	17.051
	CRR073307	Third green 2	11.141
	CRR073308	Third green 3	18.398
	CRR073309	Second white 1	27.742
	CRR073310	Second white 2	46.078
	CRR073311	Second white 3	54.836
	CRR073312	Silver flowering 1	56.564
	CRR073313	Silver flowering 2	57.215
	CRR073314	Silver flowering 3	49.343
	CRR073315	Gold flowering 1	3.815
	CRR073316	Gold flowering 2	8.191
	CRR073317	Gold flowering 3	4.668
	CRR073318	Tawny withering 1	10.028
	CRR073319	Tawny withering 2	10.531
	CRR073320	Tawny withering 3	12.695