Detail information of GWHGAAZE001082


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009611775.10PREDICTED: vacuolar protein sorting-associated protein 4-like [Nicotiana tomentosiformis]
Swissprottr|Q9ZNT0|VPS4_ARATH0Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 {ECO:0000303|PubMed:17468262}
trEMBLtr|M5WHD1|M5WHD1_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ08663.1}
TAIR10AT2G27600.10AAA-type ATPase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2420071924214560-
GWHAAZE00000001mRNA2420071924214560-
GWHAAZE00000001exon2421425724214560-
GWHAAZE00000001exon2421340624213576-
GWHAAZE00000001exon2421080824210913-
GWHAAZE00000001exon2420474424204942-
GWHAAZE00000001exon2420319124203259-
GWHAAZE00000001exon2420303824203112-
GWHAAZE00000001exon2420227024202368-
GWHAAZE00000001exon2420200124202181-
GWHAAZE00000001exon2420071924200891-
GWHAAZE00000001CDS2421425724214560-
GWHAAZE00000001CDS2421340624213576-
GWHAAZE00000001CDS2421080824210913-
GWHAAZE00000001CDS2420474424204942-
GWHAAZE00000001CDS2420319124203259-
GWHAAZE00000001CDS2420303824203112-
GWHAAZE00000001CDS2420227024202368-
GWHAAZE00000001CDS2420200124202181-
GWHAAZE00000001CDS2420071924200891-
Transcript Sequence

Network for GWHGAAZE001082

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04212.19MIT7703.10E-21
PF00004.30AAA1682974.50E-43
PF09336.11Vps4_C4174551.20E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12196VPS4 Endocytosis map04144
Necroptosismap04217

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf74.011
SRR3591706second leaf32.719
SRR3591707mature leaf39.211
SRR3591708Shoot apex48.835
SRR3591709Stem81.681
SRR3591710White floral bud59.882
SRR3591711White flower77.534
SRR3591712Green floral bud51.076
SRR3591713Yellow flower82.862
SRP173429 SRR8316895Juvenile bud stage 38.417
SRR8316896Juvenile bud stage 57.567
SRR8316897Juvenile bud stage 42.423
SRR8316894Third green stage 19.782
SRR8316900Third green stage 63.265
SRR8316901Third green stage 54.888
SRR8316898Complete white stage 37.880
SRR8316899Complete white stage 92.350
SRR8316903Complete white stage 56.428
SRR8316902Silver flowering stage39.388
SRR8316904Silver flowering stage60.198
SRR8316905Silver flowering stage28.558
SRR8316906Gold flowering stage 100.539
SRR8316907Gold flowering stage 104.922
SRR8316908Gold flowering stage 112.946
SRP132670SRR6706286Control73.722
SRR6706287Light intensity 50%76.041
SRR6706288Light intensity 20%81.064
CNP0000432CNS0095592Slightly white alabastrum(diploid) 145.540
CNS0095593Slightly white alabastrum(diploid) 245.236
CNS0095594Slightly white alabastrum(diploid) 344.777
CNS0095595Whole white alabastrum(diploid) 249.038
CNS0095596Whole white alabastrum(diploid) 333.211
CNS0095597Whole white alabastrum(diploid) 443.466
CNS0095598Silvery flower (diploied) 153.125
CNS0095599Silvery flower (diploied) 259.341
CNS0095600Silvery flower (diploied) 387.757
CNS0095601Golden flower (diploid) 159.490
CNS0095602Golden flower (diploid) 283.701
CNS0095603Golden flower (diploid) 383.886
CNS0095604Slightly white alabastrum(tetraploid) 140.066
CNS0095605Slightly white alabastrum(tetraploid) 237.855
CNS0095606Slightly white alabastrum(tetraploid) 367.455
CNS0095607Whole white alabastrum(tetraploid) 133.796
CNS0095608Whole white alabastrum(tetraploid) 231.829
CNS0095609Whole white alabastrum(tetraploid) 353.736
CNS0095610Silvery flower (tetraploid) 1101.849
CNS0095611Silvery flower (tetraploid) 285.292
CNS0095612Silvery flower (tetraploid) 382.323
CNS0095613Golden flower (tetraploid) 172.560
CNS0095614Golden flower (tetraploid) 288.761
CNS0095615Golden flower (tetraploid) 398.037
CRA001975CRR073297Stem 151.962
CRR073298Stem 254.446
CRR073299Stem 351.736
CRR073300Leaf 160.940
CRR073301Leaf 257.630
CRR073302Leaf 353.164
CRR073303Juvenile bud 167.850
CRR073304Juvenile bud 262.428
CRR073305Juvenile bud 387.196
CRR073306Third green 158.539
CRR073307Third green 253.988
CRR073308Third green 349.487
CRR073309Second white 186.514
CRR073310Second white 268.764
CRR073311Second white 374.909
CRR073312Silver flowering 179.490
CRR073313Silver flowering 269.959
CRR073314Silver flowering 361.033
CRR073315Gold flowering 135.751
CRR073316Gold flowering 250.939
CRR073317Gold flowering 338.301
CRR073318Tawny withering 171.693
CRR073319Tawny withering 280.074
CRR073320Tawny withering 377.740