Gene detail

Detail information of GWHGAAZE001090

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010050165.1	1.73146E-67	PREDICTED: TMV resistance protein N-like [Eucalyptus grandis]
Swissprot	tr\|O23530\|SNC1_ARATH	7E-30	Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1
trEMBL	tr\|A0A059CK72\|A0A059CK72_EUCGR	1E-55	Uncharacterized protein {ECO:0000313\|EMBL:KCW78556.1} (Fragment)
TAIR10	AT1G69550.1	2E-35	disease resistance protein (TIR-NBS-LRR class)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	24380076	24381932	-
GWHAAZE00000001	mRNA	24380076	24381932	-
GWHAAZE00000001	exon	24380076	24381194	-
GWHAAZE00000001	exon	24381450	24381737	-
GWHAAZE00000001	exon	24381927	24381932	-
GWHAAZE00000001	CDS	24381927	24381932	-
GWHAAZE00000001	CDS	24381450	24381737	-
GWHAAZE00000001	CDS	24380076	24381194	-

Transcript Sequence
>GWHTAAZE001092 ATGGTGTGTACAGAAAATGTTAAACTTCTCTGCCTTCCAAGTTCTGGATTGGGGGAGCGAGAACGCATTGGAGGAGAAGAGTTTCGTAAGCTACCAAATCTAAGGTATCTTGATATAAATCGCATAGACTTTGATGGAGATTTTAAGAATCTTCTTCAAAATTTAAGATGGCTCCGGTGGGCGTACGGCCCTGGAAATTGTGCCCCTACTAATTTTCATCTGAAGAATCTTGTTATTGTCGAACTTTGTGATTGTGAAATCAGAGATGAATGGGGGGGCTGGAGTCAAATAAAGTTGCTCTATAGGCTTGATGGGCTTGAAGATTTAAAATCATTAAAGTATCTGAATGCATCAAGTTGCTGTTCCTTGGAAAGTCTGCCGGATTTGTCAAAACTAACAAGTTTACAGTCATTAGCTGTTGATAATTGCAAGAAACTGATTGGGATTCAAGGACTAGACAGATTGGCATCCTTGGAACATCTGGATATAGGCTTCTGCGAATCCTTACAAAGCTTGCCAGATCTTTCAAACTTACAAAAGTTAACTAGATTTGAGTCCTCATGGTGCGAGAAGCTAGTTGAGATTCAAGGACTAGACAGATTGGCATCCTTGGAACATCTGGATATAGGCGGCTGCGAATCCTTACAAAGCTTGCCAGATCTTTCAAACTTACAAAAGTTAACTAGATTTGAGTCCTCAAGGTGCGTGAAGCTAGTTGAGATTCAAGGACTAGACAGATTGGCATCCTTGGAACATCTAGATATATGCTATTGCGAATCCTTACAAAGCTTGCCGGATCTTTCAAACTTAGAAAAGTTAGCTAGATTTATGTCCTCAGGGTGCAAGAAGCTAGTTGAGATTCAAGGACTAGACAGATTGGCATCCTTGGAACATATGGATATAGGCGGCTGCAAATCCTTACAAAGCTTGCCAGATCTTTCAAACTTACAAAAGTTAACTAGATTTAAGTCCTCATGGTGCGAGAAGCTAGTTGAGATTCAAGGACTAGACAGATTGGCATCCTTAGAACATTTGGATATAAGCTATTGTGAATCCTTACGAAGCTTGCCAGATCTTTCAAACTTAGAAAAGTTAACTAGATTTGAGTCCTCATGGTGCAAGAAACTAGTTGAGATTCAAGGCCTAGACAGATTGGCATCCTTAGAATTTTTGGATATAAGTCATTGTGAATCCTTACAAAGCTTGCCAAATCTTTCAAACTTAGAAAAGTTAACTGGATTTGACTCCTCATGGTGTGAGAAGCTAGTTGAGATTCAAGGACTAGACAGATTGGCATCCTTGGAACATCTAGATATACGCCATTGCGAATCCTTACAAAGCTTGCCAGATCTTTCAAACTTACAAAAGTTAACTAGATTTGAGTCCTCATGGTCTCATGGTGCGAGAAGCTAG

Network for GWHGAAZE001090

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0158

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13306.7	LRR_5	119	227	0.5
PF13306.7	LRR_5	257	364	0.042
PF00560.34	LRR_1	433	450	1.8

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.391
	SRR3591706	second leaf	2.333
	SRR3591707	mature leaf	1.931
	SRR3591708	Shoot apex	2.090
	SRR3591709	Stem	3.613
	SRR3591710	White floral bud	6.205
	SRR3591711	White flower	7.690
	SRR3591712	Green floral bud	4.813
	SRR3591713	Yellow flower	6.440
SRP173429	SRR8316895	Juvenile bud stage	1.894
	SRR8316896	Juvenile bud stage	2.435
	SRR8316897	Juvenile bud stage	0.748
	SRR8316894	Third green stage	1.254
	SRR8316900	Third green stage	3.238
	SRR8316901	Third green stage	2.852
	SRR8316898	Complete white stage	1.437
	SRR8316899	Complete white stage	4.049
	SRR8316903	Complete white stage	2.603
	SRR8316902	Silver flowering stage	0.960
	SRR8316904	Silver flowering stage	2.922
	SRR8316905	Silver flowering stage	1.006
	SRR8316906	Gold flowering stage	3.241
	SRR8316907	Gold flowering stage	1.989
	SRR8316908	Gold flowering stage	1.652
SRP132670	SRR6706286	Control	0.818
	SRR6706287	Light intensity 50%	0.930
	SRR6706288	Light intensity 20%	1.072
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.626
	CNS0095593	Slightly white alabastrum(diploid) 2	0.687
	CNS0095594	Slightly white alabastrum(diploid) 3	0.630
	CNS0095595	Whole white alabastrum(diploid) 2	2.220
	CNS0095596	Whole white alabastrum(diploid) 3	1.344
	CNS0095597	Whole white alabastrum(diploid) 4	1.344
	CNS0095598	Silvery flower (diploied) 1	1.487
	CNS0095599	Silvery flower (diploied) 2	1.430
	CNS0095600	Silvery flower (diploied) 3	4.024
	CNS0095601	Golden flower (diploid) 1	1.196
	CNS0095602	Golden flower (diploid) 2	3.723
	CNS0095603	Golden flower (diploid) 3	3.215
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.024
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.045
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.028
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.036
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.042
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.035
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.524
	CRR073298	Stem 2	1.383
	CRR073299	Stem 3	0.793
	CRR073300	Leaf 1	1.504
	CRR073301	Leaf 2	1.141
	CRR073302	Leaf 3	0.789
	CRR073303	Juvenile bud 1	1.181
	CRR073304	Juvenile bud 2	0.487
	CRR073305	Juvenile bud 3	0.980
	CRR073306	Third green 1	0.433
	CRR073307	Third green 2	0.250
	CRR073308	Third green 3	0.316
	CRR073309	Second white 1	0.352
	CRR073310	Second white 2	0.979
	CRR073311	Second white 3	0.653
	CRR073312	Silver flowering 1	0.789
	CRR073313	Silver flowering 2	0.421
	CRR073314	Silver flowering 3	0.581
	CRR073315	Gold flowering 1	0.153
	CRR073316	Gold flowering 2	1.215
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.965
	CRR073319	Tawny withering 2	1.617
	CRR073320	Tawny withering 3	1.828