Gene detail

Detail information of GWHGAAZE001097

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002275928.1	PREDICTED: protein argonaute 4 [Vitis vinifera]
Swissprot	tr\|Q9ZVD5\|AGO4_ARATH	Protein argonaute 4
trEMBL	tr\|D7T1K2\|D7T1K2_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI24382.3}
TAIR10	AT2G27040.2	Argonaute family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	24796798	24802826	+
GWHAAZE00000001	mRNA	24796798	24802826	+
GWHAAZE00000001	exon	24796798	24797055	+
GWHAAZE00000001	exon	24797173	24797378	+
GWHAAZE00000001	exon	24797714	24797938	+
GWHAAZE00000001	exon	24798163	24798251	+
GWHAAZE00000001	exon	24798347	24798441	+
GWHAAZE00000001	exon	24798519	24798616	+
GWHAAZE00000001	exon	24798750	24798915	+
GWHAAZE00000001	exon	24799014	24799130	+
GWHAAZE00000001	exon	24799207	24799282	+
GWHAAZE00000001	exon	24799692	24799744	+
GWHAAZE00000001	exon	24799849	24799962	+
GWHAAZE00000001	exon	24800062	24800227	+
GWHAAZE00000001	exon	24800311	24800423	+
GWHAAZE00000001	exon	24800572	24800709	+
GWHAAZE00000001	exon	24800859	24800986	+
GWHAAZE00000001	exon	24801192	24801257	+
GWHAAZE00000001	exon	24801564	24801627	+
GWHAAZE00000001	exon	24801729	24801840	+
GWHAAZE00000001	exon	24801915	24801988	+
GWHAAZE00000001	exon	24802331	24802425	+
GWHAAZE00000001	exon	24802519	24802550	+
GWHAAZE00000001	exon	24802651	24802826	+
GWHAAZE00000001	CDS	24796798	24797055	+
GWHAAZE00000001	CDS	24797173	24797378	+
GWHAAZE00000001	CDS	24797714	24797938	+
GWHAAZE00000001	CDS	24798163	24798251	+
GWHAAZE00000001	CDS	24798347	24798441	+
GWHAAZE00000001	CDS	24798519	24798616	+
GWHAAZE00000001	CDS	24798750	24798915	+
GWHAAZE00000001	CDS	24799014	24799130	+
GWHAAZE00000001	CDS	24799207	24799282	+
GWHAAZE00000001	CDS	24799692	24799744	+
GWHAAZE00000001	CDS	24799849	24799962	+
GWHAAZE00000001	CDS	24800062	24800227	+
GWHAAZE00000001	CDS	24800311	24800423	+
GWHAAZE00000001	CDS	24800572	24800709	+
GWHAAZE00000001	CDS	24800859	24800986	+
GWHAAZE00000001	CDS	24801192	24801257	+
GWHAAZE00000001	CDS	24801564	24801627	+
GWHAAZE00000001	CDS	24801729	24801840	+
GWHAAZE00000001	CDS	24801915	24801988	+
GWHAAZE00000001	CDS	24802331	24802425	+
GWHAAZE00000001	CDS	24802519	24802550	+
GWHAAZE00000001	CDS	24802651	24802826	+

Transcript Sequence
>GWHTAAZE001099 ATGGATTCCTTTGAAGGTAATGGTAACGGCAATGGTAATGGGGTAACAGAGGCTTTGCCACCTCCCCCGCCTGTGCCTGAAAATGTTGTGCCATTGAAAGCTGAGACAGAGAATGTTCCGGAACCAGTTAAGAAGAAGATTATGCGAGTCCCAATAGCTAGACGTGGCCTGGCGCCTAAGGGTTCCAAGATCCCGATCCTAACTAATCACTTCAAAGTGAACGTAACTAATGTGGATGGCCACTTCTTCCATTACAGTGTTGCCCTTTTTTATGAAGATGGTCGCCCAGTTGATGGAAAGGGCATTGGAAGAAAAGTGCTGGATCGAGTTCACGAGACGTATGACACAGAGTTAGCAGGGAAAGAGTTTGCTTACGATGGAGAAAAGAGCTTGTTTACTGTTGGAGCTCTGCCAAGGAACAAGCTTGAATTTACTGTTGTGCTTGAGGATGTTACATCCAATAGGAACAATGGAAATAGCAGCCCTGGTGGTCATGGAAGTCCAAATGAGGCTGATCGGAAAAGGATGCGTCGAGCATATCAATCTAAAACTTTCAAAGTGGAGATAAGTTTTGCTGCCAAAATTCCTATGCAGGCCATTGCACTTGCATTACGAGGCCAAGAATCAGAGAACTCTCAAGAGGCATTAAGAGTTCTAGATATCATTCTAAGGCAGCATGCAGCGAAGCAGAATTTCACTGATGTGGGAGGTGGTGTTCTTGGCTGCCGAGGATTCCATTCGAAGCGAACTACCCAGGGTGGCTTATCTTTGAACATCGATGTATCAACAACCATGATTATCCAGCCTGGGCCAGTTGTGGATTTTCTTATTGCCAATCAAAATGTGAAAGATCCGCTGATTGACTGGGCAAAGGCCAAGCTTACACTAAAGAATTTGAGGGTGAAGATAAGTACCACCAATACTGAGTACAAGATAACTGGGTTAAGTGAAAGGCCTTGCAAGGAGCAGACCTTTTCATTGAAGCAAAAAAGCGGAAGGGATGATGATGGTGAAGTTCAAGAAATCACTGTTTATGATTATTATGTCAATAACCGCCACATTGAGTTACGCTACTCAGCTGATTTGCCGTGCATCAATGTTGGGAAGCCTAAGCGCCCAACTTTCTTTCCGCTTGAGCTATGTTCGTTGGTCTCATTGCAACGTTATACAAAATCTCTAACCAATCTTCAACGAGCTTCACTAGTGGAGAAATCAAGACAAAAGCCGCAAGAGAGAATGAAAGTTTTGTCAGATGCTCTGAAGATCAACAATTATGAAGCTGAACCATTGCTGCTCTTGTGGCATTTCAATTGGTACCAACTTCACTCAGGAAATGGAGAAGAGTTTTTTGCTAGAAATGGGCGGTGGAACTTTAACAACAAGAAACTGGTGGACCCCACCAAAATAGAACGCTGGGCAGTGGTCAACTTTTCAGCTCGATGTGACACCCGTGGCCTTATCCGGGATTTGATCAAGTGTGGAGGGATGAAGGGCATTCACATTGATGCTCCATTTGACGTCTTTGAGGAGAACCCTGCAAATAGACGGGCTCCACCTCTTGTTAGAGTTGAAAAGATGTTTGAAGATATACAATCCAAGCTTCCTGGGGCTCCCCAGTTCCTTCTCTGTATACTTCCGGAGCGGAAAAACTCTCTTCTCTACGGTCCATGGAAGCGAAAGAATCTCTCTGAATATGGAATTGTTACACAATGCATTGCCCCAACAAGAGTCAATGATCAATACCTCACAAATGTTCTGCTTAAGATCAATGCAAAGCTTGGTGGGTTGAATTCTATGTTGGTGATGGAGCATACTCCTTCAATTCCCTTGGTGTCTAAGGTGCCTACTATAATTCTTGGAATGGATGTTTCGCACGGTTCCCCGGGCCAGTCTGATGTTCCATCGATTGCAGCGGTGGTAAGTTCTAGGCAGTGGCCATTGATTTCCGTTATAGGGCATCGGTGCACTCAGTCACCGAAGGTTGAAATGATTGATTCCCTCTTCAAGAAAACCTCTGACACAGAAGATGATGGGATAATTAGGGAGCTTTTGGTAGATTTCTATACAAGTTCTGGGAAACGAAAGCCAGATCAGATCATCATTTTCAGGGATGGTGTCAGCGAATCACAGTTTAATCAAGTTCTGAACATTGAGTTGGATCAAATTATAGAGGCATGCAAGTTTCTTGATGAAAAATGGTGCCCAAAGTTTGTTGTGATTATTGCTCAGAAAAATCACCATACCAAGTTCTTCCAAACCAACTCTCCTGATAATGTTCCTCCAGGTACCGTGATTGACAACAAAATATGTCATCCAAGGAACAACGATTTTTACTTGTGCGCTCAAGCTGGAATGATTGGGACCACACGGCCCACCCACTACCATGTTTTATTGGACGAGGTTGGTTTCTCAGCTGATGATCTCCAGGACCTTGTACATTCTCTGTCTTATGTGTACCAGAGGAGCACCACTGCGATTTCTGTAGTTGCCCCAATATGCTATGCTCACTTGGCAGCCACTCAGATGGGGCAATTTATGAAGTTTGATGACATGTCAGAGACATCATCGAGCCATGGAGGTGTGACTGCTCCTGGGGCAATTCCTGTTCCTCAGCTGCCAAGACTGAAGGAGAATGTTTGCAATTCGATGTTCTTTTGTTAA

Network for GWHGAAZE001097

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16486.6	ArgoN	63	223	1.70E-27
PF08699.11	ArgoL1	229	267	1.60E-08
PF02170.23	PAZ	274	401	4.90E-24
PF02171.18	Piwi	541	847	2.60E-101

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11593	ELF2C, AGO	Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	93.836
	SRR3591706	second leaf	69.456
	SRR3591707	mature leaf	39.560
	SRR3591708	Shoot apex	123.614
	SRR3591709	Stem	58.665
	SRR3591710	White floral bud	42.895
	SRR3591711	White flower	31.091
	SRR3591712	Green floral bud	59.718
	SRR3591713	Yellow flower	22.070
SRP173429	SRR8316895	Juvenile bud stage	36.657
	SRR8316896	Juvenile bud stage	52.082
	SRR8316897	Juvenile bud stage	11.949
	SRR8316894	Third green stage	23.985
	SRR8316900	Third green stage	40.011
	SRR8316901	Third green stage	54.918
	SRR8316898	Complete white stage	9.735
	SRR8316899	Complete white stage	72.210
	SRR8316903	Complete white stage	29.740
	SRR8316902	Silver flowering stage	7.836
	SRR8316904	Silver flowering stage	8.763
	SRR8316905	Silver flowering stage	5.744
	SRR8316906	Gold flowering stage	9.560
	SRR8316907	Gold flowering stage	11.799
	SRR8316908	Gold flowering stage	12.132
SRP132670	SRR6706286	Control	33.510
	SRR6706287	Light intensity 50%	32.864
	SRR6706288	Light intensity 20%	40.795
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.030
	CNS0095593	Slightly white alabastrum(diploid) 2	32.234
	CNS0095594	Slightly white alabastrum(diploid) 3	23.984
	CNS0095595	Whole white alabastrum(diploid) 2	27.210
	CNS0095596	Whole white alabastrum(diploid) 3	12.075
	CNS0095597	Whole white alabastrum(diploid) 4	19.781
	CNS0095598	Silvery flower (diploied) 1	42.673
	CNS0095599	Silvery flower (diploied) 2	42.265
	CNS0095600	Silvery flower (diploied) 3	32.898
	CNS0095601	Golden flower (diploid) 1	32.714
	CNS0095602	Golden flower (diploid) 2	52.223
	CNS0095603	Golden flower (diploid) 3	44.537
	CNS0095604	Slightly white alabastrum(tetraploid) 1	45.666
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.849
	CNS0095606	Slightly white alabastrum(tetraploid) 3	128.100
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.776
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.046
	CNS0095609	Whole white alabastrum(tetraploid) 3	60.803
	CNS0095610	Silvery flower (tetraploid) 1	45.173
	CNS0095611	Silvery flower (tetraploid) 2	59.477
	CNS0095612	Silvery flower (tetraploid) 3	39.473
	CNS0095613	Golden flower (tetraploid) 1	22.464
	CNS0095614	Golden flower (tetraploid) 2	39.626
	CNS0095615	Golden flower (tetraploid) 3	14.123
CRA001975	CRR073297	Stem 1	86.222
	CRR073298	Stem 2	71.661
	CRR073299	Stem 3	78.813
	CRR073300	Leaf 1	67.389
	CRR073301	Leaf 2	55.595
	CRR073302	Leaf 3	60.380
	CRR073303	Juvenile bud 1	47.079
	CRR073304	Juvenile bud 2	37.158
	CRR073305	Juvenile bud 3	83.781
	CRR073306	Third green 1	5.476
	CRR073307	Third green 2	6.112
	CRR073308	Third green 3	10.997
	CRR073309	Second white 1	9.017
	CRR073310	Second white 2	6.094
	CRR073311	Second white 3	8.240
	CRR073312	Silver flowering 1	3.775
	CRR073313	Silver flowering 2	5.226
	CRR073314	Silver flowering 3	3.890
	CRR073315	Gold flowering 1	29.500
	CRR073316	Gold flowering 2	40.705
	CRR073317	Gold flowering 3	38.948
	CRR073318	Tawny withering 1	46.359
	CRR073319	Tawny withering 2	35.961
	CRR073320	Tawny withering 3	40.633