Gene detail

Detail information of GWHGAAZE001106

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002311286.2	3.58447E-72	hypothetical protein POPTR_0008s08220g [Populus trichocarpa]
Swissprot	tr\|Q39548\|KSB_CUCMA	8E-63	Ent-kaur-16-ene synthase, chloroplastic (Precursor)
trEMBL	tr\|B9HI37\|B9HI37_POPTR	1E-72	Uncharacterized protein {ECO:0000313\|EMBL:EEE88653.2}
TAIR10	AT1G79460.1	2E-43	Terpenoid cyclases/Protein prenyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	25193939	25200604	+
GWHAAZE00000001	mRNA	25193939	25200604	+
GWHAAZE00000001	exon	25193939	25194031	+
GWHAAZE00000001	exon	25194286	25194550	+
GWHAAZE00000001	exon	25194673	25194753	+
GWHAAZE00000001	exon	25200288	25200604	+
GWHAAZE00000001	CDS	25193939	25194031	+
GWHAAZE00000001	CDS	25194286	25194550	+
GWHAAZE00000001	CDS	25194673	25194753	+
GWHAAZE00000001	CDS	25200288	25200604	+

Transcript Sequence
>GWHTAAZE001108 GAACCATTTGCATTTGGCTTTCTCATCTTTTCTTTTCAAGCAGCTTCGTCCGATGCTGGAGTTAAAATATCGACAGAGGCTAATACTGTCCTGAGCTCTGAAGGGATCAAAGAAAGAATTAGGAAATTGTTTAATAGGGTTGAACTCTCTGTCTCTTCGTACGACACCGCTTGGGTAGCTGTGGTTCCTTCCCCACATTATTCTCTAGCCCCGTGTTTTCCGGAGTGTGTAGATTGGTTATTGGATAATCAGCTCGGCGATGGCTCATGGGGTTTGCCTAGTCAGAGTCACCTATTACTCAAAGACACTCTTTCCTCCACATTAGCGTGTATCCTTGCACTAAAGCGCTGGGGTGTTGGTCTGCATTTTATTGAGTTGAATTTCCCTTCAGCTATTGATAAGAGTCAACATTCGCCAAGATTTGACATCATATTTCCTGGGAAGCCTACTTGGGCATATGTATCAGAAGGAATAGGGAAGTTCCAAGATTGGGAAATGGTGATGAAGAAATATCAGAGGAAGAACGGGTCACTCTTCAACTCGCCTGCCACTACAGCCGCTGCTCTTACTCATCATCTTCAAGATGCTGGCTGTCATAATTATATTCGCACACTCTTAGACAAGTTTGGGAATGCAGGTACCTACCTCCATAATTATACGATTCGTCTATTGTCTTTTGTATCAACTCTACAGTACATATTTCAAACTAGGGGGTTATGTTTGGTTGATCTTCAGTTCCAACAGTTTACCCTCTAG

Network for GWHGAAZE001106

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04121	E4.2.3.19	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0010333	molecular_function	terpene synthase activity
GO:0016829	molecular_function	lyase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.207
	SRR3591706	second leaf	0.628
	SRR3591707	mature leaf	0.110
	SRR3591708	Shoot apex	0.384
	SRR3591709	Stem	2.889
	SRR3591710	White floral bud	0.095
	SRR3591711	White flower	0.102
	SRR3591712	Green floral bud	0.072
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.211
	SRR8316896	Juvenile bud stage	0.325
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.176
	SRR8316900	Third green stage	0.557
	SRR8316901	Third green stage	0.161
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.171
	SRR8316903	Complete white stage	0.124
	SRR8316902	Silver flowering stage	0.049
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.103
SRP132670	SRR6706286	Control	0.520
	SRR6706287	Light intensity 50%	0.588
	SRR6706288	Light intensity 20%	0.269
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.341
	CNS0095593	Slightly white alabastrum(diploid) 2	0.273
	CNS0095594	Slightly white alabastrum(diploid) 3	0.195
	CNS0095595	Whole white alabastrum(diploid) 2	0.499
	CNS0095596	Whole white alabastrum(diploid) 3	0.433
	CNS0095597	Whole white alabastrum(diploid) 4	0.401
	CNS0095598	Silvery flower (diploied) 1	0.051
	CNS0095599	Silvery flower (diploied) 2	0.549
	CNS0095600	Silvery flower (diploied) 3	0.050
	CNS0095601	Golden flower (diploid) 1	0.148
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.032
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.002
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.023
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.058
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.015
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.089
	CRR073298	Stem 2	0.243
	CRR073299	Stem 3	0.028
	CRR073300	Leaf 1	0.503
	CRR073301	Leaf 2	0.402
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.144
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.111
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.069
	CRR073319	Tawny withering 2	0.241
	CRR073320	Tawny withering 3	0.090