Detail information of GWHGAAZE001128


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADZ28517.10neoxanthin synthase [Camellia nitidissima]
Swissprottr|Q9SEA0|CCS_CITSI0Capsanthin/capsorubin synthase, chromoplast (Precursor)
trEMBLtr|F1KPE6|F1KPE6_9ERIC0Neoxanthin synthase {ECO:0000313|EMBL:ADZ28517.1}
TAIR10AT3G10230.12E-155lycopene cyclase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2568489825686385-
GWHAAZE00000001mRNA2568489825686385-
GWHAAZE00000001exon2568489825686385-
GWHAAZE00000001CDS2568489825686385-
Transcript Sequence

Network for GWHGAAZE001128

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05834.13Lycopene_cycl814721.50E-137
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14593CCS1 Carotenoid biosynthesis map00906

Gene Ontology

GO term OntologyName
GO:0016117biological_processcarotenoid biosynthetic process
GO:0016705molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.080
SRR3591706second leaf2.344
SRR3591707mature leaf8.475
SRR3591708Shoot apex4.413
SRR3591709Stem7.361
SRR3591710White floral bud217.339
SRR3591711White flower414.829
SRR3591712Green floral bud128.197
SRR3591713Yellow flower397.061
SRP173429 SRR8316895Juvenile bud stage 12.625
SRR8316896Juvenile bud stage 20.919
SRR8316897Juvenile bud stage 10.599
SRR8316894Third green stage 17.032
SRR8316900Third green stage 99.366
SRR8316901Third green stage 66.347
SRR8316898Complete white stage 84.545
SRR8316899Complete white stage 129.658
SRR8316903Complete white stage 111.910
SRR8316902Silver flowering stage141.467
SRR8316904Silver flowering stage231.976
SRR8316905Silver flowering stage143.871
SRR8316906Gold flowering stage 300.216
SRR8316907Gold flowering stage 278.900
SRR8316908Gold flowering stage 359.137
SRP132670SRR6706286Control68.188
SRR6706287Light intensity 50%78.829
SRR6706288Light intensity 20%92.131
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.537
CNS0095593Slightly white alabastrum(diploid) 228.158
CNS0095594Slightly white alabastrum(diploid) 312.712
CNS0095595Whole white alabastrum(diploid) 233.759
CNS0095596Whole white alabastrum(diploid) 338.506
CNS0095597Whole white alabastrum(diploid) 435.262
CNS0095598Silvery flower (diploied) 143.403
CNS0095599Silvery flower (diploied) 269.259
CNS0095600Silvery flower (diploied) 3264.782
CNS0095601Golden flower (diploid) 1107.312
CNS0095602Golden flower (diploid) 2225.387
CNS0095603Golden flower (diploid) 3223.212
CNS0095604Slightly white alabastrum(tetraploid) 141.334
CNS0095605Slightly white alabastrum(tetraploid) 232.412
CNS0095606Slightly white alabastrum(tetraploid) 380.001
CNS0095607Whole white alabastrum(tetraploid) 120.139
CNS0095608Whole white alabastrum(tetraploid) 233.906
CNS0095609Whole white alabastrum(tetraploid) 3107.735
CNS0095610Silvery flower (tetraploid) 1289.998
CNS0095611Silvery flower (tetraploid) 2433.973
CNS0095612Silvery flower (tetraploid) 3492.819
CNS0095613Golden flower (tetraploid) 1335.038
CNS0095614Golden flower (tetraploid) 2307.998
CNS0095615Golden flower (tetraploid) 3335.499
CRA001975CRR073297Stem 130.657
CRR073298Stem 233.647
CRR073299Stem 335.180
CRR073300Leaf 191.016
CRR073301Leaf 274.355
CRR073302Leaf 398.403
CRR073303Juvenile bud 1105.244
CRR073304Juvenile bud 2108.883
CRR073305Juvenile bud 3105.296
CRR073306Third green 1493.747
CRR073307Third green 2339.185
CRR073308Third green 3356.779
CRR073309Second white 1701.481
CRR073310Second white 2432.249
CRR073311Second white 3517.604
CRR073312Silver flowering 1381.331
CRR073313Silver flowering 2318.893
CRR073314Silver flowering 3294.909
CRR073315Gold flowering 12.827
CRR073316Gold flowering 24.144
CRR073317Gold flowering 33.589
CRR073318Tawny withering 12.797
CRR073319Tawny withering 24.277
CRR073320Tawny withering 33.377