Gene detail

Detail information of GWHGAAZE001130

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP33114.1	2.0944E-178	hypothetical protein JCGZ_13561 [Jatropha curcas]
Swissprot	tr\|Q9SJF3\|DCP1_ARATH	2E-131	mRNA-decapping enzyme-like protein
trEMBL	tr\|A0A067KMT7\|A0A067KMT7_JATCU	8E-179	Uncharacterized protein {ECO:0000313\|EMBL:KDP33114.1}
TAIR10	AT1G08370.1	2E-99	decapping 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	25705388	25718328	+
GWHAAZE00000001	mRNA	25705388	25718328	+
GWHAAZE00000001	exon	25705388	25705597	+
GWHAAZE00000001	exon	25706844	25706884	+
GWHAAZE00000001	exon	25707002	25707051	+
GWHAAZE00000001	exon	25711421	25711565	+
GWHAAZE00000001	exon	25715145	25715201	+
GWHAAZE00000001	exon	25715913	25716039	+
GWHAAZE00000001	exon	25716914	25717381	+
GWHAAZE00000001	exon	25718221	25718328	+
GWHAAZE00000001	CDS	25705388	25705597	+
GWHAAZE00000001	CDS	25706844	25706884	+
GWHAAZE00000001	CDS	25707002	25707051	+
GWHAAZE00000001	CDS	25711421	25711565	+
GWHAAZE00000001	CDS	25715145	25715201	+
GWHAAZE00000001	CDS	25715913	25716039	+
GWHAAZE00000001	CDS	25716914	25717381	+
GWHAAZE00000001	CDS	25718221	25718328	+

Transcript Sequence
>GWHTAAZE001132 GGTTTTCATCCCCAATTCCCCAACCTCAAAGAGATAAACATAAAGAAAATGTCACAGAACGGCATGAAATTAATGCCGAATCTGGACCAACAAAGCACTAAACTCCTCAACTTAACCGTACTTCAACGAATCGATCCATTTGTTGAAGAAATTCTCATCACTGCTGCTCACGTTACTTTCTACGAATTCAACATCGACCTCAGCCAATGGAGTCGCAAGGATGTGGAGGGATCTCTATTTGTCGTTAAGAGGAATACTCAACCTCGTTTCCAGTTCATTGTAATGAACAGGAGAAATACAGATAATTTGGTGGAGAATCTGTTGGGAGATTTTGAATATGAAATCCAGGTTCCGTATCTGTTGTATCGAAACGCTTCCCAAGAGGTGAATGGTATATGGTTCTACAATGCACGGGAATGTGAAGAGGTTGCAAATCTCTTTAGCAGGATCCTTAGTGCCTACTCCAAGGTGCCTACAAAGTCGATAGTATCTTCAACAAAAAGTGAGTTCGAAGAACTTGAAGCGGTACCAACAATGGCTGTAATGGATGGCCCTTTGGAACCATCATCTTCAACTACTTCAAATGTTGCAGATGCACCTGATGATTCTTCCTTTGTGAACTTCTTCAGTACGGCAATGACAATAGGAAATGATTCAAATGCTGCAATTACAGGACAAACTTACCAACCTTCCTCAGTAGTCCCTCCTCGCGCACCTAATGTTGTGGCCCCCACCGTACCAACCATGCAAACGCCTCCTACTCTTGCAACATCTACTCCTTTAATGTCTATCTTCGATGCGCAAGAATCCATTAACAATCGGACCACAAATTTGGTAAAACCGTCGACTTTTTTCGTTCCCCCGCCTTCCTCTTCTCAGCTTATGGTGGTGCCGCCAGTCCTTTCCTCAATGCCCACAGCTCCTCCACTTCATCCACCTTCGAACCTACAACGCCCTTACGGTGCTCCATTGCTTCAACCATTTCCACCACCTACTCCCCCACCGTCTCTTACTCCAAGCCCCACTCCTCCACCTTCAAACTATGGGCCTGTTATTAGCCGAGAAAATGTCCGTGATGCTCTTCTTGTGCTTGTTCAGGGCGCTGTTAAATGCACATCACTCCTGACCAGTTCAAAGGGCGTCGTGATTCCTGTTGCTGTCTACTGGTTTTACTCCCATGTGAGAGAGAGGAGAGAGTTTGTATAG

Network for GWHGAAZE001130

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06058.14	DCP1	34	148	1.90E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12611	DCP1B	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0000290	biological_process	deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0043085	biological_process	positive regulation of catalytic activity
GO:0008047	molecular_function	enzyme activator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.263
	SRR3591706	second leaf	14.230
	SRR3591707	mature leaf	24.780
	SRR3591708	Shoot apex	21.031
	SRR3591709	Stem	25.801
	SRR3591710	White floral bud	28.946
	SRR3591711	White flower	48.083
	SRR3591712	Green floral bud	27.441
	SRR3591713	Yellow flower	64.297
SRP173429	SRR8316895	Juvenile bud stage	17.453
	SRR8316896	Juvenile bud stage	24.506
	SRR8316897	Juvenile bud stage	11.245
	SRR8316894	Third green stage	9.411
	SRR8316900	Third green stage	28.004
	SRR8316901	Third green stage	27.374
	SRR8316898	Complete white stage	12.245
	SRR8316899	Complete white stage	30.498
	SRR8316903	Complete white stage	21.757
	SRR8316902	Silver flowering stage	21.498
	SRR8316904	Silver flowering stage	27.059
	SRR8316905	Silver flowering stage	15.833
	SRR8316906	Gold flowering stage	42.160
	SRR8316907	Gold flowering stage	41.766
	SRR8316908	Gold flowering stage	38.331
SRP132670	SRR6706286	Control	20.163
	SRR6706287	Light intensity 50%	18.333
	SRR6706288	Light intensity 20%	19.197
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.849
	CNS0095593	Slightly white alabastrum(diploid) 2	19.534
	CNS0095594	Slightly white alabastrum(diploid) 3	18.422
	CNS0095595	Whole white alabastrum(diploid) 2	18.426
	CNS0095596	Whole white alabastrum(diploid) 3	14.895
	CNS0095597	Whole white alabastrum(diploid) 4	19.904
	CNS0095598	Silvery flower (diploied) 1	25.400
	CNS0095599	Silvery flower (diploied) 2	21.301
	CNS0095600	Silvery flower (diploied) 3	45.815
	CNS0095601	Golden flower (diploid) 1	25.520
	CNS0095602	Golden flower (diploid) 2	49.246
	CNS0095603	Golden flower (diploid) 3	46.843
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.806
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.442
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.198
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.113
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.944
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.293
	CNS0095610	Silvery flower (tetraploid) 1	44.495
	CNS0095611	Silvery flower (tetraploid) 2	52.989
	CNS0095612	Silvery flower (tetraploid) 3	50.372
	CNS0095613	Golden flower (tetraploid) 1	46.201
	CNS0095614	Golden flower (tetraploid) 2	48.556
	CNS0095615	Golden flower (tetraploid) 3	74.743
CRA001975	CRR073297	Stem 1	29.538
	CRR073298	Stem 2	31.891
	CRR073299	Stem 3	35.113
	CRR073300	Leaf 1	31.216
	CRR073301	Leaf 2	31.777
	CRR073302	Leaf 3	26.518
	CRR073303	Juvenile bud 1	38.558
	CRR073304	Juvenile bud 2	32.806
	CRR073305	Juvenile bud 3	49.905
	CRR073306	Third green 1	31.878
	CRR073307	Third green 2	27.914
	CRR073308	Third green 3	29.576
	CRR073309	Second white 1	65.729
	CRR073310	Second white 2	45.152
	CRR073311	Second white 3	44.290
	CRR073312	Silver flowering 1	55.127
	CRR073313	Silver flowering 2	62.209
	CRR073314	Silver flowering 3	43.649
	CRR073315	Gold flowering 1	31.655
	CRR073316	Gold flowering 2	50.748
	CRR073317	Gold flowering 3	41.056
	CRR073318	Tawny withering 1	31.871
	CRR073319	Tawny withering 2	27.899
	CRR073320	Tawny withering 3	34.182