Detail information of GWHGAAZE001135


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002273038.12.23752E-96PREDICTED: F-box protein At2g27310 [Vitis vinifera]
Swissprottr|Q2V3R1|FB346_ARATH1E-67F-box protein At3g44326
trEMBLtr|F6HHD6|F6HHD6_VITVI8E-97Putative uncharacterized protein {ECO:0000313|EMBL:CCB51632.1}
TAIR10AT3G44326.19E-52F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2579673825797850+
GWHAAZE00000001mRNA2579673825797850+
GWHAAZE00000001exon2579673825797625+
GWHAAZE00000001exon2579784825797850+
GWHAAZE00000001CDS2579673825797625+
GWHAAZE00000001CDS2579784825797850+
Transcript Sequence

Network for GWHGAAZE001135

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.644
SRR3591706second leaf1.771
SRR3591707mature leaf2.871
SRR3591708Shoot apex9.794
SRR3591709Stem20.326
SRR3591710White floral bud13.973
SRR3591711White flower10.970
SRR3591712Green floral bud3.918
SRR3591713Yellow flower5.286
SRP173429 SRR8316895Juvenile bud stage 5.029
SRR8316896Juvenile bud stage 1.676
SRR8316897Juvenile bud stage 2.007
SRR8316894Third green stage 2.557
SRR8316900Third green stage 4.845
SRR8316901Third green stage 5.672
SRR8316898Complete white stage 4.051
SRR8316899Complete white stage 13.105
SRR8316903Complete white stage 10.987
SRR8316902Silver flowering stage1.177
SRR8316904Silver flowering stage1.899
SRR8316905Silver flowering stage1.054
SRR8316906Gold flowering stage 2.213
SRR8316907Gold flowering stage 1.716
SRR8316908Gold flowering stage 2.967
SRP132670SRR6706286Control11.681
SRR6706287Light intensity 50%14.005
SRR6706288Light intensity 20%10.066
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.972
CNS0095593Slightly white alabastrum(diploid) 28.265
CNS0095594Slightly white alabastrum(diploid) 39.650
CNS0095595Whole white alabastrum(diploid) 29.672
CNS0095596Whole white alabastrum(diploid) 38.122
CNS0095597Whole white alabastrum(diploid) 410.949
CNS0095598Silvery flower (diploied) 17.921
CNS0095599Silvery flower (diploied) 211.643
CNS0095600Silvery flower (diploied) 37.299
CNS0095601Golden flower (diploid) 110.422
CNS0095602Golden flower (diploid) 28.191
CNS0095603Golden flower (diploid) 37.648
CNS0095604Slightly white alabastrum(tetraploid) 13.399
CNS0095605Slightly white alabastrum(tetraploid) 22.896
CNS0095606Slightly white alabastrum(tetraploid) 32.611
CNS0095607Whole white alabastrum(tetraploid) 13.605
CNS0095608Whole white alabastrum(tetraploid) 22.819
CNS0095609Whole white alabastrum(tetraploid) 32.322
CNS0095610Silvery flower (tetraploid) 11.176
CNS0095611Silvery flower (tetraploid) 21.519
CNS0095612Silvery flower (tetraploid) 31.586
CNS0095613Golden flower (tetraploid) 12.099
CNS0095614Golden flower (tetraploid) 20.466
CNS0095615Golden flower (tetraploid) 30.616
CRA001975CRR073297Stem 13.449
CRR073298Stem 24.605
CRR073299Stem 34.440
CRR073300Leaf 111.796
CRR073301Leaf 214.413
CRR073302Leaf 37.849
CRR073303Juvenile bud 120.411
CRR073304Juvenile bud 221.536
CRR073305Juvenile bud 320.637
CRR073306Third green 11.549
CRR073307Third green 20.890
CRR073308Third green 32.391
CRR073309Second white 10.041
CRR073310Second white 20.252
CRR073311Second white 30.153
CRR073312Silver flowering 10.906
CRR073313Silver flowering 21.174
CRR073314Silver flowering 31.277
CRR073315Gold flowering 11.477
CRR073316Gold flowering 210.707
CRR073317Gold flowering 314.154
CRR073318Tawny withering 14.933
CRR073319Tawny withering 232.792
CRR073320Tawny withering 38.553