Detail information of GWHGAAZE001147


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP06861.10unnamed protein product [Coffea canephora]
Swissprottr|Q9FV71|E2FB_ARATH3E-133Transcription factor E2FB
trEMBLtr|A0A068UEG0|A0A068UEG0_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_24 {ECO:0000313|EMBL:CDP06861.1}
TAIR10AT5G22220.21E-109E2F transcription factor 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2609774426106368-
GWHAAZE00000001mRNA2609774426106368-
GWHAAZE00000001exon2610620726106368-
GWHAAZE00000001exon2610177726101972-
GWHAAZE00000001exon2610131826101377-
GWHAAZE00000001exon2610108226101167-
GWHAAZE00000001exon2610091526101003-
GWHAAZE00000001exon2610073426100788-
GWHAAZE00000001exon2610035926100411-
GWHAAZE00000001exon2610021926100269-
GWHAAZE00000001exon2609980926099857-
GWHAAZE00000001exon2609925126099327-
GWHAAZE00000001exon2609892926099160-
GWHAAZE00000001exon2609834126098404-
GWHAAZE00000001exon2609774426097883-
GWHAAZE00000001CDS2610620726106368-
GWHAAZE00000001CDS2610177726101972-
GWHAAZE00000001CDS2610131826101377-
GWHAAZE00000001CDS2610108226101167-
GWHAAZE00000001CDS2610091526101003-
GWHAAZE00000001CDS2610073426100788-
GWHAAZE00000001CDS2610035926100411-
GWHAAZE00000001CDS2610021926100269-
GWHAAZE00000001CDS2609980926099857-
GWHAAZE00000001CDS2609925126099327-
GWHAAZE00000001CDS2609892926099160-
GWHAAZE00000001CDS2609834126098404-
GWHAAZE00000001CDS2609774426097883-
Transcript Sequence

Network for GWHGAAZE001147

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02319.21E2F_TDP1361991.80E-25
PF16421.6E2F_CC-MB2152926.10E-15
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyE2F-DP

KEGG pathway

KO Enzyme pathway mapID
K06620E2F3 Cell cycle map04110
Cellular senescencemap04218

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0005667cellular_componenttranscription regulator complex
GO:0046983molecular_functionprotein dimerization activity
GO:0003700molecular_functionDNA-binding transcription factor activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.433
SRR3591706second leaf6.048
SRR3591707mature leaf6.529
SRR3591708Shoot apex11.738
SRR3591709Stem13.763
SRR3591710White floral bud12.171
SRR3591711White flower18.258
SRR3591712Green floral bud7.562
SRR3591713Yellow flower19.879
SRP173429 SRR8316895Juvenile bud stage 6.256
SRR8316896Juvenile bud stage 9.592
SRR8316897Juvenile bud stage 4.498
SRR8316894Third green stage 2.807
SRR8316900Third green stage 6.707
SRR8316901Third green stage 7.432
SRR8316898Complete white stage 5.816
SRR8316899Complete white stage 11.598
SRR8316903Complete white stage 10.713
SRR8316902Silver flowering stage8.802
SRR8316904Silver flowering stage11.581
SRR8316905Silver flowering stage5.463
SRR8316906Gold flowering stage 17.162
SRR8316907Gold flowering stage 17.327
SRR8316908Gold flowering stage 16.550
SRP132670SRR6706286Control5.752
SRR6706287Light intensity 50%6.802
SRR6706288Light intensity 20%7.282
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.597
CNS0095593Slightly white alabastrum(diploid) 29.062
CNS0095594Slightly white alabastrum(diploid) 37.780
CNS0095595Whole white alabastrum(diploid) 23.776
CNS0095596Whole white alabastrum(diploid) 33.824
CNS0095597Whole white alabastrum(diploid) 43.917
CNS0095598Silvery flower (diploied) 111.094
CNS0095599Silvery flower (diploied) 28.178
CNS0095600Silvery flower (diploied) 312.138
CNS0095601Golden flower (diploid) 15.222
CNS0095602Golden flower (diploid) 29.421
CNS0095603Golden flower (diploid) 39.279
CNS0095604Slightly white alabastrum(tetraploid) 14.430
CNS0095605Slightly white alabastrum(tetraploid) 24.213
CNS0095606Slightly white alabastrum(tetraploid) 39.461
CNS0095607Whole white alabastrum(tetraploid) 12.713
CNS0095608Whole white alabastrum(tetraploid) 22.010
CNS0095609Whole white alabastrum(tetraploid) 35.634
CNS0095610Silvery flower (tetraploid) 113.389
CNS0095611Silvery flower (tetraploid) 211.583
CNS0095612Silvery flower (tetraploid) 314.402
CNS0095613Golden flower (tetraploid) 19.370
CNS0095614Golden flower (tetraploid) 213.026
CNS0095615Golden flower (tetraploid) 38.857
CRA001975CRR073297Stem 114.962
CRR073298Stem 212.096
CRR073299Stem 310.494
CRR073300Leaf 110.881
CRR073301Leaf 213.869
CRR073302Leaf 37.697
CRR073303Juvenile bud 111.639
CRR073304Juvenile bud 28.984
CRR073305Juvenile bud 312.583
CRR073306Third green 111.226
CRR073307Third green 29.796
CRR073308Third green 310.065
CRR073309Second white 110.749
CRR073310Second white 212.629
CRR073311Second white 314.548
CRR073312Silver flowering 18.966
CRR073313Silver flowering 28.567
CRR073314Silver flowering 38.674
CRR073315Gold flowering 16.701
CRR073316Gold flowering 211.868
CRR073317Gold flowering 37.605
CRR073318Tawny withering 110.676
CRR073319Tawny withering 213.258
CRR073320Tawny withering 315.248