Gene detail

Detail information of GWHGAAZE001148

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002277262.1	8.31967E-50	PREDICTED: uncharacterized protein LOC100255272 isoform X1 [Vitis vinifera]
Swissprot	tr\|P82413\|RK19_SPIOL	3E-22	50S ribosomal protein L19, chloroplastic (Precursor)
trEMBL	tr\|F6GTR3\|F6GTR3_VITVI	3E-50	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB42929.1}
TAIR10	AT4G11630.1	4E-30	Ribosomal protein L19 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	26126423	26128741	-
GWHAAZE00000001	mRNA	26126423	26128741	-
GWHAAZE00000001	exon	26126423	26126560	-
GWHAAZE00000001	exon	26126681	26126767	-
GWHAAZE00000001	exon	26126923	26127129	-
GWHAAZE00000001	exon	26128514	26128741	-
GWHAAZE00000001	CDS	26128514	26128741	-
GWHAAZE00000001	CDS	26126923	26127129	-
GWHAAZE00000001	CDS	26126681	26126767	-
GWHAAZE00000001	CDS	26126423	26126560	-

Transcript Sequence
>GWHTAAZE001150 ATGCAATCATTTTGGGGGAGGATTCGTGTAGTTGCAAGGCATAAAATTAACAATGTGAGGATTGTTGACCCTAAATCAACTAGGGGTTATGGGTTTAGCACGTCAGAATCTAATGCCTTCACTTCAAAAGGAGGTGTGGCCAAATCCTTTGAGAGCCCAATTGATTACTCCATAGGAGGCATCTCTGAGTTGGATTCCAAGTTTGTTTCTCGCTCGTCAATGGTGTTGCACAAGAAATTTGGCCAAGAAACATACTCGAGATCATCTAGTAGTAGTGGTACGACTTCAATAACGCCATTCTGCCGAGATCCCAGGCCAGCTATTTTTCAATGGGCAGCTATGGTGCCAACTTTTTCCAGTAGGTGCATTGCGACAGTGAATTACTCATCTGAATCTGTTTCTAAAGCTACTTCTGCATCTATCTCTGAACCCGAGATCCTCGATAAGGAAGCTGTGGAGGAAGTGAGATCACAAAGGGAGATACCAGATATAAAGCCTGGTTATATAATCCAGCTCAAACTGGAAGTGCCTGAGAACAAGAGAAGGAATTCATTAGTGAAAGGCATTGTTATAGCAAGACGCAATGCTGGTCTAAATACCACAATTAGATTAAGACGAATGGTTGCAGGTGTTGGGGTTGAATCTCTCTTACCTTTGTAA

Network for GWHGAAZE001148

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01245.21	Ribosomal_L19	151	219	6.00E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02884	RP-L19, MRPL19, rplS	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.701
	SRR3591706	second leaf	14.460
	SRR3591707	mature leaf	11.530
	SRR3591708	Shoot apex	27.223
	SRR3591709	Stem	17.781
	SRR3591710	White floral bud	17.170
	SRR3591711	White flower	28.303
	SRR3591712	Green floral bud	24.931
	SRR3591713	Yellow flower	19.062
SRP173429	SRR8316895	Juvenile bud stage	21.635
	SRR8316896	Juvenile bud stage	31.502
	SRR8316897	Juvenile bud stage	12.219
	SRR8316894	Third green stage	11.846
	SRR8316900	Third green stage	28.872
	SRR8316901	Third green stage	27.374
	SRR8316898	Complete white stage	8.105
	SRR8316899	Complete white stage	32.812
	SRR8316903	Complete white stage	14.110
	SRR8316902	Silver flowering stage	10.084
	SRR8316904	Silver flowering stage	13.018
	SRR8316905	Silver flowering stage	5.584
	SRR8316906	Gold flowering stage	17.611
	SRR8316907	Gold flowering stage	19.427
	SRR8316908	Gold flowering stage	20.481
SRP132670	SRR6706286	Control	24.998
	SRR6706287	Light intensity 50%	25.453
	SRR6706288	Light intensity 20%	25.969
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.578
	CNS0095593	Slightly white alabastrum(diploid) 2	21.425
	CNS0095594	Slightly white alabastrum(diploid) 3	27.108
	CNS0095595	Whole white alabastrum(diploid) 2	18.031
	CNS0095596	Whole white alabastrum(diploid) 3	16.134
	CNS0095597	Whole white alabastrum(diploid) 4	13.690
	CNS0095598	Silvery flower (diploied) 1	23.366
	CNS0095599	Silvery flower (diploied) 2	13.627
	CNS0095600	Silvery flower (diploied) 3	21.070
	CNS0095601	Golden flower (diploid) 1	16.506
	CNS0095602	Golden flower (diploid) 2	22.543
	CNS0095603	Golden flower (diploid) 3	18.985
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.658
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.756
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.513
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.852
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.789
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.147
	CNS0095610	Silvery flower (tetraploid) 1	22.024
	CNS0095611	Silvery flower (tetraploid) 2	24.917
	CNS0095612	Silvery flower (tetraploid) 3	16.160
	CNS0095613	Golden flower (tetraploid) 1	10.178
	CNS0095614	Golden flower (tetraploid) 2	21.580
	CNS0095615	Golden flower (tetraploid) 3	12.947
CRA001975	CRR073297	Stem 1	27.744
	CRR073298	Stem 2	21.055
	CRR073299	Stem 3	25.658
	CRR073300	Leaf 1	27.344
	CRR073301	Leaf 2	19.805
	CRR073302	Leaf 3	23.928
	CRR073303	Juvenile bud 1	21.381
	CRR073304	Juvenile bud 2	16.991
	CRR073305	Juvenile bud 3	24.436
	CRR073306	Third green 1	2.602
	CRR073307	Third green 2	4.101
	CRR073308	Third green 3	3.185
	CRR073309	Second white 1	8.906
	CRR073310	Second white 2	6.524
	CRR073311	Second white 3	7.507
	CRR073312	Silver flowering 1	4.592
	CRR073313	Silver flowering 2	5.871
	CRR073314	Silver flowering 3	3.801
	CRR073315	Gold flowering 1	16.712
	CRR073316	Gold flowering 2	24.084
	CRR073317	Gold flowering 3	14.756
	CRR073318	Tawny withering 1	22.122
	CRR073319	Tawny withering 2	17.984
	CRR073320	Tawny withering 3	22.270