Detail information of GWHGAAZE001148


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002277262.18.31967E-50PREDICTED: uncharacterized protein LOC100255272 isoform X1 [Vitis vinifera]
Swissprottr|P82413|RK19_SPIOL3E-2250S ribosomal protein L19, chloroplastic (Precursor)
trEMBLtr|F6GTR3|F6GTR3_VITVI3E-50Putative uncharacterized protein {ECO:0000313|EMBL:CCB42929.1}
TAIR10AT4G11630.14E-30Ribosomal protein L19 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2612642326128741-
GWHAAZE00000001mRNA2612642326128741-
GWHAAZE00000001exon2612642326126560-
GWHAAZE00000001exon2612668126126767-
GWHAAZE00000001exon2612692326127129-
GWHAAZE00000001exon2612851426128741-
GWHAAZE00000001CDS2612851426128741-
GWHAAZE00000001CDS2612692326127129-
GWHAAZE00000001CDS2612668126126767-
GWHAAZE00000001CDS2612642326126560-
Transcript Sequence

Network for GWHGAAZE001148

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01245.21Ribosomal_L191512196.00E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02884RP-L19, MRPL19, rplS Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE001148.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 302.557.51012.51517.52022.52527.53032.535Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.701
SRR3591706second leaf14.460
SRR3591707mature leaf11.530
SRR3591708Shoot apex27.223
SRR3591709Stem17.781
SRR3591710White floral bud17.170
SRR3591711White flower28.303
SRR3591712Green floral bud24.931
SRR3591713Yellow flower19.062
SRP173429 SRR8316895Juvenile bud stage 21.635
SRR8316896Juvenile bud stage 31.502
SRR8316897Juvenile bud stage 12.219
SRR8316894Third green stage 11.846
SRR8316900Third green stage 28.872
SRR8316901Third green stage 27.374
SRR8316898Complete white stage 8.105
SRR8316899Complete white stage 32.812
SRR8316903Complete white stage 14.110
SRR8316902Silver flowering stage10.084
SRR8316904Silver flowering stage13.018
SRR8316905Silver flowering stage5.584
SRR8316906Gold flowering stage 17.611
SRR8316907Gold flowering stage 19.427
SRR8316908Gold flowering stage 20.481
SRP132670SRR6706286Control24.998
SRR6706287Light intensity 50%25.453
SRR6706288Light intensity 20%25.969
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.578
CNS0095593Slightly white alabastrum(diploid) 221.425
CNS0095594Slightly white alabastrum(diploid) 327.108
CNS0095595Whole white alabastrum(diploid) 218.031
CNS0095596Whole white alabastrum(diploid) 316.134
CNS0095597Whole white alabastrum(diploid) 413.690
CNS0095598Silvery flower (diploied) 123.366
CNS0095599Silvery flower (diploied) 213.627
CNS0095600Silvery flower (diploied) 321.070
CNS0095601Golden flower (diploid) 116.506
CNS0095602Golden flower (diploid) 222.543
CNS0095603Golden flower (diploid) 318.985
CNS0095604Slightly white alabastrum(tetraploid) 118.658
CNS0095605Slightly white alabastrum(tetraploid) 217.756
CNS0095606Slightly white alabastrum(tetraploid) 329.513
CNS0095607Whole white alabastrum(tetraploid) 18.852
CNS0095608Whole white alabastrum(tetraploid) 27.789
CNS0095609Whole white alabastrum(tetraploid) 321.147
CNS0095610Silvery flower (tetraploid) 122.024
CNS0095611Silvery flower (tetraploid) 224.917
CNS0095612Silvery flower (tetraploid) 316.160
CNS0095613Golden flower (tetraploid) 110.178
CNS0095614Golden flower (tetraploid) 221.580
CNS0095615Golden flower (tetraploid) 312.947
CRA001975CRR073297Stem 127.744
CRR073298Stem 221.055
CRR073299Stem 325.658
CRR073300Leaf 127.344
CRR073301Leaf 219.805
CRR073302Leaf 323.928
CRR073303Juvenile bud 121.381
CRR073304Juvenile bud 216.991
CRR073305Juvenile bud 324.436
CRR073306Third green 12.602
CRR073307Third green 24.101
CRR073308Third green 33.185
CRR073309Second white 18.906
CRR073310Second white 26.524
CRR073311Second white 37.507
CRR073312Silver flowering 14.592
CRR073313Silver flowering 25.871
CRR073314Silver flowering 33.801
CRR073315Gold flowering 116.712
CRR073316Gold flowering 224.084
CRR073317Gold flowering 314.756
CRR073318Tawny withering 122.122
CRR073319Tawny withering 217.984
CRR073320Tawny withering 322.270