Gene detail

Detail information of GWHGAAZE001162

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP06854.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9ST62\|NDB1_SOLTU	7E-16	External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (Precursor)
trEMBL	tr\|A0A068UF78\|A0A068UF78_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_24 {ECO:0000313\|EMBL:CDP06854.1}
TAIR10	AT3G44190.1	1E-138	FAD/NAD(P)-binding oxidoreductase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	26554960	26559366	+
GWHAAZE00000001	mRNA	26554960	26559366	+
GWHAAZE00000001	exon	26554960	26555099	+
GWHAAZE00000001	exon	26556242	26556498	+
GWHAAZE00000001	exon	26557658	26558109	+
GWHAAZE00000001	exon	26559094	26559366	+
GWHAAZE00000001	CDS	26554960	26555099	+
GWHAAZE00000001	CDS	26556242	26556498	+
GWHAAZE00000001	CDS	26557658	26558109	+
GWHAAZE00000001	CDS	26559094	26559366	+

Transcript Sequence
>GWHTAAZE001164 ATGGAGAGGGGAAACCAACAAGAAGAGGGAGGAGAATGGGGAGGAGGAGGGAAGAAAGTGGTGGTGATTGGAGGCGGAGTTGCCGGTTCACTCATTGCTAAATCTCTTCAATTCTCGTCTGATCTCACCCTTATTGACCCGAAGGAGTATTTTGAGATACCATGGGCAAGCTTGAGATCAATGGTGGAGCCTTCATTTGCAGAGAGATCAGTGATCCGCCATAGAGATTACCTAACAAATGGCCATCTCATTACTTCTACTGCCATCAGAATCACTGAGACCGAAGTCTTGACCGCTGATGGCCGGTTGGTTGGCTATGACTATCTCGTCATTGCCACCGGTCATGCTGACCGGGTTCCAAGAACAAGAACAGAGAGACTTGAGCAATACGAAGCAGATAATGAAAAAATAAAAGCTGCAAATTCCATTCTAATCATTGGAGGTGGACCGACCGGCGTTGAGCTAGCTGGAGAAATTGCAGTCGACTACTCAGAGAAAAAAGTCACTCTAGTCCACAATGGATCACGCCTTCTTGAATTCCTAGGACCAAAAGCATCAAATAAGACTTTAGCTTGGCTGAAATCAAGGAAGGTTGAAGTAAAATTGGACCAATCAGTCAATCTAAACAATATATCAGAAGGAAACAACACATATGTAACTTCGGCCGGAGAAACTATCAATGCAGATTGCCATTTCTTGTGCATAGGGAAGCCAGTAGCCTCAAAATGGCTTAAAGAGACCATTTTGAGAGATAGCATGGACGAATTTGGAAGGTTGAGGGTTGATGAGAACTTGAGAGTGAAGGGTTGCAGCAATATCTTTGCAATCGGTGATATTACGGATGTTAAGGAAATTAAGCAAGGATACTTGGCACAAAAACATGCATTAGTTGCCACAAAGAACATAAAGTTATTGTTGAACGGAGGAAAAGAAGCGAAAATGGCAAAATACGAGCCTCGTTCTATTAAAGCCATTGTTTCGCTAGGGAGACATGATGCCGTGGCTCAGTTTCCAATGACGACAATCATCGGACTTGTACCAGGATTGTTCAAGTCTAAGGATTTATTTGTGGGGAAAACAAGAAAGAGTATGGGTCTTGATCCTCACAATAATGTGTATTGA

Network for GWHGAAZE001162

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07992.15	Pyr_redox_2	18	294	5.00E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K22745	AIFM2	p53 signaling pathway	map04115

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	224.075
	SRR3591706	second leaf	48.273
	SRR3591707	mature leaf	29.213
	SRR3591708	Shoot apex	77.861
	SRR3591709	Stem	162.162
	SRR3591710	White floral bud	63.463
	SRR3591711	White flower	67.469
	SRR3591712	Green floral bud	28.776
	SRR3591713	Yellow flower	17.550
SRP173429	SRR8316895	Juvenile bud stage	128.995
	SRR8316896	Juvenile bud stage	117.120
	SRR8316897	Juvenile bud stage	107.817
	SRR8316894	Third green stage	17.017
	SRR8316900	Third green stage	27.043
	SRR8316901	Third green stage	48.333
	SRR8316898	Complete white stage	8.198
	SRR8316899	Complete white stage	95.498
	SRR8316903	Complete white stage	11.918
	SRR8316902	Silver flowering stage	11.162
	SRR8316904	Silver flowering stage	11.752
	SRR8316905	Silver flowering stage	5.305
	SRR8316906	Gold flowering stage	16.408
	SRR8316907	Gold flowering stage	11.174
	SRR8316908	Gold flowering stage	22.421
SRP132670	SRR6706286	Control	18.163
	SRR6706287	Light intensity 50%	22.053
	SRR6706288	Light intensity 20%	15.270
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	82.786
	CNS0095593	Slightly white alabastrum(diploid) 2	112.338
	CNS0095594	Slightly white alabastrum(diploid) 3	98.267
	CNS0095595	Whole white alabastrum(diploid) 2	65.655
	CNS0095596	Whole white alabastrum(diploid) 3	17.568
	CNS0095597	Whole white alabastrum(diploid) 4	45.246
	CNS0095598	Silvery flower (diploied) 1	170.549
	CNS0095599	Silvery flower (diploied) 2	161.888
	CNS0095600	Silvery flower (diploied) 3	69.525
	CNS0095601	Golden flower (diploid) 1	236.001
	CNS0095602	Golden flower (diploid) 2	132.252
	CNS0095603	Golden flower (diploid) 3	128.177
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.613
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.166
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.128
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.462
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.462
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.232
	CNS0095610	Silvery flower (tetraploid) 1	20.138
	CNS0095611	Silvery flower (tetraploid) 2	13.048
	CNS0095612	Silvery flower (tetraploid) 3	22.879
	CNS0095613	Golden flower (tetraploid) 1	15.078
	CNS0095614	Golden flower (tetraploid) 2	15.502
	CNS0095615	Golden flower (tetraploid) 3	11.946
CRA001975	CRR073297	Stem 1	26.846
	CRR073298	Stem 2	21.483
	CRR073299	Stem 3	26.685
	CRR073300	Leaf 1	26.776
	CRR073301	Leaf 2	32.806
	CRR073302	Leaf 3	20.746
	CRR073303	Juvenile bud 1	18.851
	CRR073304	Juvenile bud 2	20.632
	CRR073305	Juvenile bud 3	16.183
	CRR073306	Third green 1	30.441
	CRR073307	Third green 2	33.196
	CRR073308	Third green 3	28.352
	CRR073309	Second white 1	11.676
	CRR073310	Second white 2	19.164
	CRR073311	Second white 3	10.171
	CRR073312	Silver flowering 1	27.418
	CRR073313	Silver flowering 2	22.768
	CRR073314	Silver flowering 3	20.762
	CRR073315	Gold flowering 1	73.238
	CRR073316	Gold flowering 2	122.648
	CRR073317	Gold flowering 3	34.883
	CRR073318	Tawny withering 1	51.405
	CRR073319	Tawny withering 2	62.453
	CRR073320	Tawny withering 3	86.489