Detail information of GWHGAAZE001169


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002274971.10PREDICTED: transcription factor LHW-like isoform X1 [Vitis vinifera]
Swissprottr|Q9XIN0|LHW_ARATH7E-104Transcription factor LHW
trEMBLtr|F6HAC3|F6HAC3_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB49202.1}
TAIR10AT2G27230.26E-91transcription factor-related

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2675305126760536-
GWHAAZE00000001mRNA2675305126760536-
GWHAAZE00000001exon2676006926760536-
GWHAAZE00000001exon2675980226759949-
GWHAAZE00000001exon2675842226758640-
GWHAAZE00000001exon2675823426758315-
GWHAAZE00000001exon2675752526757566-
GWHAAZE00000001exon2675738626757445-
GWHAAZE00000001exon2675533026756409-
GWHAAZE00000001exon2675480026755207-
GWHAAZE00000001exon2675458626754687-
GWHAAZE00000001exon2675387826754018-
GWHAAZE00000001exon2675363726753780-
GWHAAZE00000001exon2675305126753227-
GWHAAZE00000001five_prime_UTR2676006926760536-
GWHAAZE00000001five_prime_UTR2675989726759949-
GWHAAZE00000001CDS2675980226759896-
GWHAAZE00000001CDS2675842226758640-
GWHAAZE00000001CDS2675823426758315-
GWHAAZE00000001CDS2675752526757566-
GWHAAZE00000001CDS2675738626757445-
GWHAAZE00000001CDS2675533026756409-
GWHAAZE00000001CDS2675480026755207-
GWHAAZE00000001CDS2675458626754687-
GWHAAZE00000001CDS2675387826754018-
GWHAAZE00000001CDS2675363726753780-
GWHAAZE00000001CDS2675305126753227-
Transcript Sequence

Network for GWHGAAZE001169

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14215.7bHLH-MYC_N51803.40E-34
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046983molecular_functionprotein dimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf37.973
SRR3591706second leaf43.920
SRR3591707mature leaf47.516
SRR3591708Shoot apex54.230
SRR3591709Stem62.971
SRR3591710White floral bud31.533
SRR3591711White flower48.886
SRR3591712Green floral bud43.869
SRR3591713Yellow flower19.244
SRP173429 SRR8316895Juvenile bud stage 18.271
SRR8316896Juvenile bud stage 20.944
SRR8316897Juvenile bud stage 10.123
SRR8316894Third green stage 14.358
SRR8316900Third green stage 28.304
SRR8316901Third green stage 25.671
SRR8316898Complete white stage 3.317
SRR8316899Complete white stage 27.912
SRR8316903Complete white stage 11.471
SRR8316902Silver flowering stage4.353
SRR8316904Silver flowering stage8.367
SRR8316905Silver flowering stage1.815
SRR8316906Gold flowering stage 7.317
SRR8316907Gold flowering stage 7.822
SRR8316908Gold flowering stage 12.538
SRP132670SRR6706286Control27.331
SRR6706287Light intensity 50%26.774
SRR6706288Light intensity 20%25.643
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.622
CNS0095593Slightly white alabastrum(diploid) 215.004
CNS0095594Slightly white alabastrum(diploid) 312.928
CNS0095595Whole white alabastrum(diploid) 213.525
CNS0095596Whole white alabastrum(diploid) 38.966
CNS0095597Whole white alabastrum(diploid) 410.330
CNS0095598Silvery flower (diploied) 144.953
CNS0095599Silvery flower (diploied) 225.999
CNS0095600Silvery flower (diploied) 320.732
CNS0095601Golden flower (diploid) 128.464
CNS0095602Golden flower (diploid) 232.035
CNS0095603Golden flower (diploid) 332.261
CNS0095604Slightly white alabastrum(tetraploid) 121.658
CNS0095605Slightly white alabastrum(tetraploid) 215.972
CNS0095606Slightly white alabastrum(tetraploid) 357.211
CNS0095607Whole white alabastrum(tetraploid) 114.118
CNS0095608Whole white alabastrum(tetraploid) 26.579
CNS0095609Whole white alabastrum(tetraploid) 325.342
CNS0095610Silvery flower (tetraploid) 127.632
CNS0095611Silvery flower (tetraploid) 224.816
CNS0095612Silvery flower (tetraploid) 311.927
CNS0095613Golden flower (tetraploid) 16.936
CNS0095614Golden flower (tetraploid) 226.762
CNS0095615Golden flower (tetraploid) 39.632
CRA001975CRR073297Stem 130.461
CRR073298Stem 228.954
CRR073299Stem 328.186
CRR073300Leaf 125.526
CRR073301Leaf 223.355
CRR073302Leaf 317.176
CRR073303Juvenile bud 111.612
CRR073304Juvenile bud 26.293
CRR073305Juvenile bud 317.513
CRR073306Third green 13.997
CRR073307Third green 22.718
CRR073308Third green 36.208
CRR073309Second white 12.693
CRR073310Second white 22.874
CRR073311Second white 31.135
CRR073312Silver flowering 11.809
CRR073313Silver flowering 23.242
CRR073314Silver flowering 31.718
CRR073315Gold flowering 113.066
CRR073316Gold flowering 221.804
CRR073317Gold flowering 320.546
CRR073318Tawny withering 147.337
CRR073319Tawny withering 233.108
CRR073320Tawny withering 345.953