Detail information of GWHGAAZE001176


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDO68483.16.12819E-93hypothetical protein CISIN_1g040761mg [Citrus sinensis]
Swissprottr|Q9SLB7|LBD16_ARATH3E-70LOB domain-containing protein 16
trEMBLtr|A0A067FM80|A0A067FM80_CITSI2E-93Uncharacterized protein {ECO:0000313|EMBL:KDO68483.1}
TAIR10AT2G42430.14E-57lateral organ boundaries-domain 16

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2695878326959726+
GWHAAZE00000001mRNA2695878326959726+
GWHAAZE00000001exon2695878326959303+
GWHAAZE00000001exon2695941526959726+
GWHAAZE00000001five_prime_UTR2695878326959018+
GWHAAZE00000001CDS2695901926959303+
GWHAAZE00000001CDS2695941526959726+
Transcript Sequence

Network for GWHGAAZE001176

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03195.15LOB91073.20E-36
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLOB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.289
SRR3591708Shoot apex0.165
SRR3591709Stem1.860
SRR3591710White floral bud0.000
SRR3591711White flower0.660
SRR3591712Green floral bud0.391
SRR3591713Yellow flower0.381
SRP173429 SRR8316895Juvenile bud stage 0.074
SRR8316896Juvenile bud stage 0.360
SRR8316897Juvenile bud stage 0.075
SRR8316894Third green stage 0.081
SRR8316900Third green stage 0.151
SRR8316901Third green stage 0.208
SRR8316898Complete white stage 0.173
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.092
SRR8316902Silver flowering stage0.159
SRR8316904Silver flowering stage0.102
SRR8316905Silver flowering stage0.109
SRR8316906Gold flowering stage 0.101
SRR8316907Gold flowering stage 0.178
SRR8316908Gold flowering stage 0.829
SRP132670SRR6706286Control0.210
SRR6706287Light intensity 50%0.176
SRR6706288Light intensity 20%0.184
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.100
CNS0095594Slightly white alabastrum(diploid) 30.383
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.928
CNS0095598Silvery flower (diploied) 10.339
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.362
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.228
CNS0095603Golden flower (diploid) 30.245
CNS0095604Slightly white alabastrum(tetraploid) 10.078
CNS0095605Slightly white alabastrum(tetraploid) 20.292
CNS0095606Slightly white alabastrum(tetraploid) 30.339
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.573
CNS0095610Silvery flower (tetraploid) 10.404
CNS0095611Silvery flower (tetraploid) 20.193
CNS0095612Silvery flower (tetraploid) 30.261
CNS0095613Golden flower (tetraploid) 10.215
CNS0095614Golden flower (tetraploid) 20.144
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.181
CRR073298Stem 20.274
CRR073299Stem 30.723
CRR073300Leaf 10.254
CRR073301Leaf 20.382
CRR073302Leaf 30.439
CRR073303Juvenile bud 10.225
CRR073304Juvenile bud 20.167
CRR073305Juvenile bud 30.482
CRR073306Third green 10.078
CRR073307Third green 20.207
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.459
CRR073311Second white 30.000
CRR073312Silver flowering 10.139
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.262
CRR073320Tawny withering 30.438