Detail information of GWHGAAZE001187


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002275928.10PREDICTED: protein argonaute 4 [Vitis vinifera]
Swissprottr|Q9ZVD5|AGO4_ARATH0Protein argonaute 4
trEMBLtr|D7T1K2|D7T1K2_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI24382.3}
TAIR10AT2G27040.20Argonaute family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2727338027279422+
GWHAAZE00000001mRNA2727338027279422+
GWHAAZE00000001exon2727338027273637+
GWHAAZE00000001exon2727375527273960+
GWHAAZE00000001exon2727429627274520+
GWHAAZE00000001exon2727470327274839+
GWHAAZE00000001exon2727493527275032+
GWHAAZE00000001exon2727511227275209+
GWHAAZE00000001exon2727534427275509+
GWHAAZE00000001exon2727560827275724+
GWHAAZE00000001exon2727580127275908+
GWHAAZE00000001exon2727627827276340+
GWHAAZE00000001exon2727644327276556+
GWHAAZE00000001exon2727665627276821+
GWHAAZE00000001exon2727690527277017+
GWHAAZE00000001exon2727716427277301+
GWHAAZE00000001exon2727745127277581+
GWHAAZE00000001exon2727778727277852+
GWHAAZE00000001exon2727816127278224+
GWHAAZE00000001exon2727832627278437+
GWHAAZE00000001exon2727851227278585+
GWHAAZE00000001exon2727892827279022+
GWHAAZE00000001exon2727911627279147+
GWHAAZE00000001exon2727924727279422+
GWHAAZE00000001CDS2727338027273637+
GWHAAZE00000001CDS2727375527273960+
GWHAAZE00000001CDS2727429627274520+
GWHAAZE00000001CDS2727470327274839+
GWHAAZE00000001CDS2727493527275032+
GWHAAZE00000001CDS2727511227275209+
GWHAAZE00000001CDS2727534427275509+
GWHAAZE00000001CDS2727560827275724+
GWHAAZE00000001CDS2727580127275908+
GWHAAZE00000001CDS2727627827276340+
GWHAAZE00000001CDS2727644327276556+
GWHAAZE00000001CDS2727665627276821+
GWHAAZE00000001CDS2727690527277017+
GWHAAZE00000001CDS2727716427277301+
GWHAAZE00000001CDS2727745127277581+
GWHAAZE00000001CDS2727778727277852+
GWHAAZE00000001CDS2727816127278224+
GWHAAZE00000001CDS2727832627278437+
GWHAAZE00000001CDS2727851227278585+
GWHAAZE00000001CDS2727892827279022+
GWHAAZE00000001CDS2727911627279147+
GWHAAZE00000001CDS2727924727279422+
Transcript Sequence

Network for GWHGAAZE001187

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16486.6ArgoN632231.80E-27
PF08699.11ArgoL12352831.80E-16
PF02170.23PAZ2894183.80E-26
PF16488.6ArgoL24284731.30E-13
PF02171.18Piwi5728791.70E-104
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11593ELF2C, AGO Axon regeneration map04361

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf215.264
SRR3591706second leaf140.798
SRR3591707mature leaf88.336
SRR3591708Shoot apex271.437
SRR3591709Stem143.771
SRR3591710White floral bud145.633
SRR3591711White flower136.748
SRR3591712Green floral bud144.532
SRR3591713Yellow flower88.251
SRP173429 SRR8316895Juvenile bud stage 164.351
SRR8316896Juvenile bud stage 183.821
SRR8316897Juvenile bud stage 100.071
SRR8316894Third green stage 68.060
SRR8316900Third green stage 185.745
SRR8316901Third green stage 146.164
SRR8316898Complete white stage 47.728
SRR8316899Complete white stage 201.807
SRR8316903Complete white stage 94.197
SRR8316902Silver flowering stage25.922
SRR8316904Silver flowering stage40.450
SRR8316905Silver flowering stage17.779
SRR8316906Gold flowering stage 59.681
SRR8316907Gold flowering stage 49.919
SRR8316908Gold flowering stage 59.808
SRP132670SRR6706286Control145.026
SRR6706287Light intensity 50%145.470
SRR6706288Light intensity 20%160.226
CNP0000432CNS0095592Slightly white alabastrum(diploid) 187.525
CNS0095593Slightly white alabastrum(diploid) 281.824
CNS0095594Slightly white alabastrum(diploid) 377.529
CNS0095595Whole white alabastrum(diploid) 273.998
CNS0095596Whole white alabastrum(diploid) 362.301
CNS0095597Whole white alabastrum(diploid) 462.771
CNS0095598Silvery flower (diploied) 1125.521
CNS0095599Silvery flower (diploied) 2115.067
CNS0095600Silvery flower (diploied) 3140.889
CNS0095601Golden flower (diploid) 1105.039
CNS0095602Golden flower (diploid) 2149.959
CNS0095603Golden flower (diploid) 3149.694
CNS0095604Slightly white alabastrum(tetraploid) 1127.671
CNS0095605Slightly white alabastrum(tetraploid) 284.226
CNS0095606Slightly white alabastrum(tetraploid) 3305.008
CNS0095607Whole white alabastrum(tetraploid) 163.408
CNS0095608Whole white alabastrum(tetraploid) 237.674
CNS0095609Whole white alabastrum(tetraploid) 3160.124
CNS0095610Silvery flower (tetraploid) 1133.868
CNS0095611Silvery flower (tetraploid) 2158.354
CNS0095612Silvery flower (tetraploid) 3107.408
CNS0095613Golden flower (tetraploid) 155.197
CNS0095614Golden flower (tetraploid) 2108.029
CNS0095615Golden flower (tetraploid) 362.651
CRA001975CRR073297Stem 1260.819
CRR073298Stem 2228.332
CRR073299Stem 3259.828
CRR073300Leaf 1257.261
CRR073301Leaf 2211.257
CRR073302Leaf 3201.570
CRR073303Juvenile bud 1190.521
CRR073304Juvenile bud 2122.320
CRR073305Juvenile bud 3270.251
CRR073306Third green 123.944
CRR073307Third green 221.776
CRR073308Third green 336.838
CRR073309Second white 132.267
CRR073310Second white 227.146
CRR073311Second white 324.342
CRR073312Silver flowering 115.535
CRR073313Silver flowering 220.276
CRR073314Silver flowering 315.590
CRR073315Gold flowering 182.849
CRR073316Gold flowering 2146.070
CRR073317Gold flowering 3123.745
CRR073318Tawny withering 1133.459
CRR073319Tawny withering 293.855
CRR073320Tawny withering 3144.028