Detail information of GWHGAAZE001227


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009592376.19.47642E-98PREDICTED: uncharacterized protein LOC104089233 [Nicotiana tomentosiformis]
Swissprottr|Q4TU14|RHF1A_ARATH0.000003E3 ubiquitin-protein ligase RHF1A
trEMBLtr|A0A061GZE8|A0A061GZE8_THECC8E-96RING/U-box superfamily protein isoform 2 {ECO:0000313|EMBL:EOY32909.1}
TAIR10AT5G12310.13E-47RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2847669928482020-
GWHAAZE00000001mRNA2847669928482020-
GWHAAZE00000001exon2848189328482020-
GWHAAZE00000001exon2847877728478881-
GWHAAZE00000001exon2847669928477122-
GWHAAZE00000001CDS2848189328482020-
GWHAAZE00000001CDS2847877728478881-
GWHAAZE00000001CDS2847669928477122-
Transcript Sequence

Network for GWHGAAZE001227

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_219632.30E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf53.416
SRR3591706second leaf24.555
SRR3591707mature leaf44.385
SRR3591708Shoot apex37.660
SRR3591709Stem75.774
SRR3591710White floral bud68.411
SRR3591711White flower57.585
SRR3591712Green floral bud56.115
SRR3591713Yellow flower77.410
SRP173429 SRR8316895Juvenile bud stage 37.908
SRR8316896Juvenile bud stage 40.016
SRR8316897Juvenile bud stage 18.486
SRR8316894Third green stage 17.968
SRR8316900Third green stage 42.638
SRR8316901Third green stage 55.726
SRR8316898Complete white stage 31.593
SRR8316899Complete white stage 78.316
SRR8316903Complete white stage 48.212
SRR8316902Silver flowering stage34.232
SRR8316904Silver flowering stage35.747
SRR8316905Silver flowering stage25.525
SRR8316906Gold flowering stage 69.835
SRR8316907Gold flowering stage 66.209
SRR8316908Gold flowering stage 64.803
SRP132670SRR6706286Control61.102
SRR6706287Light intensity 50%66.968
SRR6706288Light intensity 20%60.494
CNP0000432CNS0095592Slightly white alabastrum(diploid) 150.644
CNS0095593Slightly white alabastrum(diploid) 259.396
CNS0095594Slightly white alabastrum(diploid) 354.246
CNS0095595Whole white alabastrum(diploid) 253.612
CNS0095596Whole white alabastrum(diploid) 360.536
CNS0095597Whole white alabastrum(diploid) 466.294
CNS0095598Silvery flower (diploied) 147.529
CNS0095599Silvery flower (diploied) 243.801
CNS0095600Silvery flower (diploied) 353.210
CNS0095601Golden flower (diploid) 146.978
CNS0095602Golden flower (diploid) 256.104
CNS0095603Golden flower (diploid) 357.415
CNS0095604Slightly white alabastrum(tetraploid) 138.579
CNS0095605Slightly white alabastrum(tetraploid) 240.751
CNS0095606Slightly white alabastrum(tetraploid) 343.692
CNS0095607Whole white alabastrum(tetraploid) 140.344
CNS0095608Whole white alabastrum(tetraploid) 244.038
CNS0095609Whole white alabastrum(tetraploid) 337.319
CNS0095610Silvery flower (tetraploid) 157.265
CNS0095611Silvery flower (tetraploid) 260.011
CNS0095612Silvery flower (tetraploid) 394.383
CNS0095613Golden flower (tetraploid) 180.259
CNS0095614Golden flower (tetraploid) 263.770
CNS0095615Golden flower (tetraploid) 3101.915
CRA001975CRR073297Stem 172.189
CRR073298Stem 267.130
CRR073299Stem 377.321
CRR073300Leaf 190.647
CRR073301Leaf 295.799
CRR073302Leaf 397.119
CRR073303Juvenile bud 186.944
CRR073304Juvenile bud 2103.689
CRR073305Juvenile bud 379.550
CRR073306Third green 187.591
CRR073307Third green 284.189
CRR073308Third green 370.381
CRR073309Second white 161.679
CRR073310Second white 264.844
CRR073311Second white 343.041
CRR073312Silver flowering 154.205
CRR073313Silver flowering 243.497
CRR073314Silver flowering 343.643
CRR073315Gold flowering 174.494
CRR073316Gold flowering 288.773
CRR073317Gold flowering 365.883
CRR073318Tawny withering 170.370
CRR073319Tawny withering 260.192
CRR073320Tawny withering 360.779