Gene detail

Detail information of GWHGAAZE001230

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007015293.1	4.2471E-126	Lateral root primordium protein-related isoform 1 [Theobroma cacao]
Swissprot	tr\|Q94CK9\|LRP1_ARATH	2E-90	Protein LATERAL ROOT PRIMORDIUM 1
trEMBL	tr\|A0A061GUQ3\|A0A061GUQ3_THECC	2E-126	Lateral root primordium protein-related isoform 1 {ECO:0000313\|EMBL:EOY32912.1}
TAIR10	AT5G12330.4	1E-74	Lateral root primordium (LRP) protein-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	28515306	28518146	-
GWHAAZE00000001	mRNA	28515306	28518146	-
GWHAAZE00000001	exon	28515306	28515673	-
GWHAAZE00000001	exon	28516385	28516710	-
GWHAAZE00000001	exon	28516820	28517222	-
GWHAAZE00000001	exon	28518101	28518146	-
GWHAAZE00000001	CDS	28518101	28518146	-
GWHAAZE00000001	CDS	28516820	28517222	-
GWHAAZE00000001	CDS	28516385	28516710	-
GWHAAZE00000001	CDS	28515306	28515673	-

Transcript Sequence
>GWHTAAZE001232 ATGATTATTGGAGAGAGAGTGTGTGTCTTTGTGGCTTCCTTTGCTAACTGGGTGGCTTCATCTTCATCCGCTGCCGGCAGAGGTATAGAAGACCTATCTCTAGGATTTAATGCCAGCCCCACCGTCGGTGGTGGCGCTACCGCCGCCAGCGGTCACAACGCCGGAATGTGGTCGTCATCGTCCAGGCAAATAAACTACGGCCTAGCGCCAGAGATGGGAATGGTTGGTCTCCGTGACGTGTTTGTAGTTGCTCCTGCATCTTCCTTCCACCACCACAACCACAACCATGAGCAAACCCTCATCTCCGATCCCCACTCCATCACGGCAGCCAACGCCGCCACGGCCCTCGGCGTCGGAGTCATTCCCCTCTTCGGTCCGGCTAGCATGGGCGTGAACGATGATGACGTTATGAATACTAATAATCGGAGTAGGGCTGCCACTGGAATCCACGGCGGAGGGTCCGCCGGGACCGCTACTTGTCAGGACTGTGGCAATCAGGCAAAGAAAGATTGTACCCACCGGAGGTGTAGGACTTGTTGTAAAAGTAGAGGGTTTGATTGTGCTACTCACGTGAAAAGCACGTGGGTCCCGGCGGCTCGCCGCCGTGAGCGGCAGCTGATGGGGGCTGCCAATACCGGAGCCACCGCGGGCTCCTCCGGGTCTACCTCCGGCACAAAGAAGCCTAGGCTCACTTCTCAAACTACTACCACTTCACATACTTCAACTTCTAACACTACTCCCCCAAGAAGCTTTGATACTAGTTCTAGTCATCAAGATGCGGGTTTCAAAGAGACATTGCCGGGGCAAGTAAGGGCTCCGGCGGTGTTCAAGTGTGTCCGAGTGACAGCAGTGGAGGACGGAGATGATGAATATGCGTATCAGGCCGTTGTAAAGATCGGGGGCCACGTGTTCAAGGGGTTCTTGTATGATCAAGGGGTCGAAACAAGGGATGGGTTTCTTAACATGTCCGAATTGAATTTGGGTGGCAGTAGTAGCGGTGGTGATGGTGGCGGGGGTGGTGGTGGTGGTGGAGGGAGGAATGTGGGTTCCTCTACAACGCCAATTATCGACCCGGCAGATGTTTACGCCGCATCAGGTGGTGGTTTGCTAGGAGGATCAACTTATGGTAACCCAATAAACTGA

Network for GWHGAAZE001230

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05142.13	DUF702	157	314	1.30E-62

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SRS

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.638
	SRR3591706	second leaf	1.052
	SRR3591707	mature leaf	1.011
	SRR3591708	Shoot apex	6.051
	SRR3591709	Stem	9.365
	SRR3591710	White floral bud	11.124
	SRR3591711	White flower	22.777
	SRR3591712	Green floral bud	5.681
	SRR3591713	Yellow flower	1.936
SRP173429	SRR8316895	Juvenile bud stage	6.736
	SRR8316896	Juvenile bud stage	7.436
	SRR8316897	Juvenile bud stage	1.419
	SRR8316894	Third green stage	2.574
	SRR8316900	Third green stage	2.283
	SRR8316901	Third green stage	2.256
	SRR8316898	Complete white stage	0.934
	SRR8316899	Complete white stage	8.793
	SRR8316903	Complete white stage	1.228
	SRR8316902	Silver flowering stage	0.128
	SRR8316904	Silver flowering stage	0.577
	SRR8316905	Silver flowering stage	0.053
	SRR8316906	Gold flowering stage	0.512
	SRR8316907	Gold flowering stage	0.733
	SRR8316908	Gold flowering stage	1.099
SRP132670	SRR6706286	Control	5.482
	SRR6706287	Light intensity 50%	6.076
	SRR6706288	Light intensity 20%	4.878
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.565
	CNS0095593	Slightly white alabastrum(diploid) 2	6.389
	CNS0095594	Slightly white alabastrum(diploid) 3	4.784
	CNS0095595	Whole white alabastrum(diploid) 2	5.840
	CNS0095596	Whole white alabastrum(diploid) 3	0.960
	CNS0095597	Whole white alabastrum(diploid) 4	3.513
	CNS0095598	Silvery flower (diploied) 1	27.638
	CNS0095599	Silvery flower (diploied) 2	16.514
	CNS0095600	Silvery flower (diploied) 3	6.709
	CNS0095601	Golden flower (diploid) 1	19.833
	CNS0095602	Golden flower (diploid) 2	17.327
	CNS0095603	Golden flower (diploid) 3	18.200
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.874
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.762
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.673
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.947
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.686
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.969
	CNS0095610	Silvery flower (tetraploid) 1	2.425
	CNS0095611	Silvery flower (tetraploid) 2	8.149
	CNS0095612	Silvery flower (tetraploid) 3	4.749
	CNS0095613	Golden flower (tetraploid) 1	0.650
	CNS0095614	Golden flower (tetraploid) 2	4.069
	CNS0095615	Golden flower (tetraploid) 3	0.445
CRA001975	CRR073297	Stem 1	11.402
	CRR073298	Stem 2	10.946
	CRR073299	Stem 3	16.900
	CRR073300	Leaf 1	3.963
	CRR073301	Leaf 2	6.416
	CRR073302	Leaf 3	4.576
	CRR073303	Juvenile bud 1	1.861
	CRR073304	Juvenile bud 2	2.604
	CRR073305	Juvenile bud 3	2.595
	CRR073306	Third green 1	0.858
	CRR073307	Third green 2	0.582
	CRR073308	Third green 3	1.997
	CRR073309	Second white 1	0.871
	CRR073310	Second white 2	1.119
	CRR073311	Second white 3	0.399
	CRR073312	Silver flowering 1	0.062
	CRR073313	Silver flowering 2	1.016
	CRR073314	Silver flowering 3	0.120
	CRR073315	Gold flowering 1	2.698
	CRR073316	Gold flowering 2	3.546
	CRR073317	Gold flowering 3	1.542
	CRR073318	Tawny withering 1	27.596
	CRR073319	Tawny withering 2	22.099
	CRR073320	Tawny withering 3	25.039