Gene detail

Detail information of GWHGAAZE001233

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002527044.1	0	Minor histocompatibility antigen H13, putative [Ricinus communis]
Swissprot	tr\|O81062\|SIP_ARATH	0	Signal peptide peptidase
trEMBL	tr\|B9SM25\|B9SM25_RICCO	0	Minor histocompatibility antigen H13, putative {ECO:0000313\|EMBL:EEF35344.1}
TAIR10	AT2G03120.1	4E-159	signal peptide peptidase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	28738478	28747319	+
GWHAAZE00000001	mRNA	28738478	28747319	+
GWHAAZE00000001	exon	28738478	28738546	+
GWHAAZE00000001	exon	28738946	28739071	+
GWHAAZE00000001	exon	28741496	28741611	+
GWHAAZE00000001	exon	28741696	28741847	+
GWHAAZE00000001	exon	28741975	28742060	+
GWHAAZE00000001	exon	28742613	28742740	+
GWHAAZE00000001	exon	28743942	28743992	+
GWHAAZE00000001	exon	28745075	28745161	+
GWHAAZE00000001	exon	28745272	28745341	+
GWHAAZE00000001	exon	28745920	28746056	+
GWHAAZE00000001	exon	28746345	28746422	+
GWHAAZE00000001	exon	28747242	28747319	+
GWHAAZE00000001	five_prime_UTR	28738478	28738546	+
GWHAAZE00000001	five_prime_UTR	28738946	28739031	+
GWHAAZE00000001	CDS	28739032	28739071	+
GWHAAZE00000001	CDS	28741496	28741611	+
GWHAAZE00000001	CDS	28741696	28741847	+
GWHAAZE00000001	CDS	28741975	28742060	+
GWHAAZE00000001	CDS	28742613	28742740	+
GWHAAZE00000001	CDS	28743942	28743992	+
GWHAAZE00000001	CDS	28745075	28745161	+
GWHAAZE00000001	CDS	28745272	28745341	+
GWHAAZE00000001	CDS	28745920	28746056	+
GWHAAZE00000001	CDS	28746345	28746422	+
GWHAAZE00000001	CDS	28747242	28747319	+

Transcript Sequence
>GWHTAAZE001235 TCTATCTGTAGGGAGAGAATCAAAATACACTGAATCGGAGTTTCTCTCTCTGAAGGTATGTTTCTTCAGTCCATTTTGGCCAAAGGGTACTGCTACTGTTGCTGTATCAAGTGGTTTGAATTTTTCCTGGAGGTTGCTGATTTTGGATAGCGATCATGAAGAATAGTGAGCGTCTTGCGAATATTGCTCTAGCAGGTTTAACTCTGGCACCTCTAGTTGTGAAGGTAGACCCAAATTTAAATGTCATTTTGACTGCATGCCTCTCCGTCTATGTGGGTTGCTACCGTTCAGTCAAGTCAACTCCACCTTCAGAGACGATGTCTAACGAACATGCCATGCGCTTCCCATTGGTTGGGAGTGCAATGCTGTTGTCTTTGTTCCTGCTTTTTAAGTTTCTATCAAAGGACCTGGTTAACGCTGTACTAACAAGCTACTTTGTTGTACTTGGGATCGTCGCTCTTTCGGCGACATTGTTACCTGCAATTAGGCGATTTCTTCCAAAGCAATGGAATGAAGATCTTATAGTCTGGCATTTACCATATTTTCGCTCTGTGGAGATTGAGTTCACGAGATCTCAGATTGTTGCATCAATCCCGGGGACCTTTTTCTGTGCATGGTATGTTTCACAGAAACACTGGCTGGCTAACAACATATTGGGTCTAGCATTCTGCATTCAGGGAATTGAAATGCTTTCGCTTGGCTCATTCAAGACTGGTGCCATTCTTTTGGCTGGCCTTTTTGTATATGATATTTTCTGGGTATTTTTTACCCCAGTAATGGTTAGTGTTGCTAAATCTTTTGATGCTCCTATAAAGCTTTTATTCCCAACAGCAGATTCTGCACGTCCATTTTCAATGCTTGGACTTGGAGACATTGTTATTCCAGGTATTTTTGTAGCATTGGCATTGAGGTTCGATGTGTCCAGGGGGAAAAAGAGCCAATATTTCAGGAGCGCTTTTCTAGGATACGCAGTTGGTGTGGTGCTTACTATAATCGTCATGAACTGGTTTCAAGCTGCACAGCCTGCACTGCTATATATTGTACCGGCTGTTATCGGCTTTTTGGCTGTTCATTGCATATGGAATGGAGAAGTTAAACCGTTGTTGGAGTTTGACGAGTCCAAAACTGCCACCTCCGAAGATGGCAACGAAAGCGCTTTGAGCAAAAAAGCGGAGTGA

Network for GWHGAAZE001233

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0189

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04258.14	Peptidase_A22B	50	322	6.90E-92

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016021	cellular_component	integral component of membrane
GO:0004190	molecular_function	aspartic-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	90.540
	SRR3591706	second leaf	53.356
	SRR3591707	mature leaf	62.137
	SRR3591708	Shoot apex	71.083
	SRR3591709	Stem	76.030
	SRR3591710	White floral bud	122.369
	SRR3591711	White flower	112.401
	SRR3591712	Green floral bud	102.513
	SRR3591713	Yellow flower	165.312
SRP173429	SRR8316895	Juvenile bud stage	48.879
	SRR8316896	Juvenile bud stage	50.870
	SRR8316897	Juvenile bud stage	32.023
	SRR8316894	Third green stage	27.336
	SRR8316900	Third green stage	97.790
	SRR8316901	Third green stage	89.505
	SRR8316898	Complete white stage	70.527
	SRR8316899	Complete white stage	135.899
	SRR8316903	Complete white stage	85.967
	SRR8316902	Silver flowering stage	56.483
	SRR8316904	Silver flowering stage	79.766
	SRR8316905	Silver flowering stage	39.042
	SRR8316906	Gold flowering stage	134.563
	SRR8316907	Gold flowering stage	121.558
	SRR8316908	Gold flowering stage	123.540
SRP132670	SRR6706286	Control	91.364
	SRR6706287	Light intensity 50%	91.208
	SRR6706288	Light intensity 20%	95.791
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	67.827
	CNS0095593	Slightly white alabastrum(diploid) 2	79.902
	CNS0095594	Slightly white alabastrum(diploid) 3	71.542
	CNS0095595	Whole white alabastrum(diploid) 2	73.249
	CNS0095596	Whole white alabastrum(diploid) 3	76.664
	CNS0095597	Whole white alabastrum(diploid) 4	70.545
	CNS0095598	Silvery flower (diploied) 1	102.625
	CNS0095599	Silvery flower (diploied) 2	78.280
	CNS0095600	Silvery flower (diploied) 3	129.158
	CNS0095601	Golden flower (diploid) 1	69.005
	CNS0095602	Golden flower (diploid) 2	184.499
	CNS0095603	Golden flower (diploid) 3	175.470
	CNS0095604	Slightly white alabastrum(tetraploid) 1	70.908
	CNS0095605	Slightly white alabastrum(tetraploid) 2	59.631
	CNS0095606	Slightly white alabastrum(tetraploid) 3	98.986
	CNS0095607	Whole white alabastrum(tetraploid) 1	52.542
	CNS0095608	Whole white alabastrum(tetraploid) 2	48.873
	CNS0095609	Whole white alabastrum(tetraploid) 3	95.573
	CNS0095610	Silvery flower (tetraploid) 1	118.050
	CNS0095611	Silvery flower (tetraploid) 2	102.463
	CNS0095612	Silvery flower (tetraploid) 3	92.053
	CNS0095613	Golden flower (tetraploid) 1	71.569
	CNS0095614	Golden flower (tetraploid) 2	107.169
	CNS0095615	Golden flower (tetraploid) 3	117.309
CRA001975	CRR073297	Stem 1	76.016
	CRR073298	Stem 2	63.922
	CRR073299	Stem 3	86.922
	CRR073300	Leaf 1	84.694
	CRR073301	Leaf 2	82.664
	CRR073302	Leaf 3	111.021
	CRR073303	Juvenile bud 1	134.084
	CRR073304	Juvenile bud 2	126.069
	CRR073305	Juvenile bud 3	121.607
	CRR073306	Third green 1	89.346
	CRR073307	Third green 2	84.104
	CRR073308	Third green 3	87.008
	CRR073309	Second white 1	170.920
	CRR073310	Second white 2	117.964
	CRR073311	Second white 3	109.082
	CRR073312	Silver flowering 1	268.678
	CRR073313	Silver flowering 2	362.233
	CRR073314	Silver flowering 3	334.656
	CRR073315	Gold flowering 1	47.270
	CRR073316	Gold flowering 2	58.524
	CRR073317	Gold flowering 3	66.571
	CRR073318	Tawny withering 1	91.418
	CRR073319	Tawny withering 2	81.261
	CRR073320	Tawny withering 3	89.133