Gene detail

Detail information of GWHGAAZE001234

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002279963.2	6.3147E-123	PREDICTED: uncharacterized protein LOC100265339 [Vitis vinifera]
trEMBL	tr\|F6HA21\|F6HA21_VITVI	2E-123	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49041.1}
TAIR10	AT4G03250.1	6E-27	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	28813306	28819029	+
GWHAAZE00000001	mRNA	28813306	28819029	+
GWHAAZE00000001	exon	28813306	28813951	+
GWHAAZE00000001	exon	28815267	28815346	+
GWHAAZE00000001	exon	28817112	28817588	+
GWHAAZE00000001	exon	28818352	28818449	+
GWHAAZE00000001	exon	28818960	28819029	+
GWHAAZE00000001	CDS	28813306	28813951	+
GWHAAZE00000001	CDS	28815267	28815346	+
GWHAAZE00000001	CDS	28817112	28817588	+
GWHAAZE00000001	CDS	28818352	28818449	+
GWHAAZE00000001	CDS	28818960	28819029	+

Transcript Sequence
>GWHTAAZE001236 ATGAAACAAGAACTCGCAGATACATTAGGGTTGACAGAAAAACAAGTTTCTGGGTGGTTTTGCCACAGAAGGTTGAAGGACAGAAAGGGAGTGAACGATGAAACTCATGCACAAGGAAGACAAGACCGATCAAGCGGTGTTATACAGGATCGTGGAAGTGGGCTTAGGCAAGATTCATGTGGAAGCACCAAACAAGAGGACTATGTTCTCCGTGAACCGAGGGAAGTTGAAAGTAAAAAAAGGATTACTACTGAAGTCACTCCCCTTGCGGACCCCACAAACGAGCTCGAAGGTCATCATTCTCAAGAAGATGATAGTGGCACTGATGATGATACATCTTCAGGAAGTACCTCACCTTTACCGGATATTTTGCCCCCTCAGAATGCGAACCCCTATATTATCGCGAAATCGAGCAATTTAGCACAGAGTGGGAACATTTTACCCCTGGTGGATATGAAGGGCGTAAAAGGTAGGACAGGGCCGTCGGGATATTTGAAAGTAAAGGGTCGGGTTGAAAATTCTGCTATCACTGCGGTTAAGAGGCAATTGGGAAGGCATTATCGTGAGGATGGTCCACCACTTGCCGTCGATTTCGAGCCACTTCCTCCTGATGCATTTATGTCTTCAAACAAAGAAACCGTTAATAAACCTCTGTATGTAAGTGAACCCGTTCAGTTCCAATCGTCGGACGGTTCTAGGATTTTCAAGAAACCTAATCTTGGCATTAGAGACGAAGAAAACAATTCCAAGATGAGCCCTCACAACTCCGATTTTGATGGGTCAAGCTATAATTTGATGAATGGCTCTAATAATCACCATCATCACAAACTCTACTCTTCGCGCCAATTTAAAAAAAGACTTCCTTTATCTGATCATGGCAGTCCCTTTCTTGGACGGAATTCTTCGATGGAAATGAACGATGATTCTGCTGGAGAAACGCCGCATTATGACGTTAACAACTATGAGCTCAAGCCTAAGCATGGTGGAAAAATGCAAATGGATTCTCTTTCTAGCCATCAAAAGCGTCCTTACGGTGGGAAAATCAGTAGCAAACAACCACAGCCTCAGTTGCATAACTATGATGATACAATCCCAAAGGTGTCCCAGAGAGAATACTTTGAATCTAAACCATCGAATTTGACAGTAAGGCGCAGTGAATTCCTTGGTTCGGATGACAAGGGGCTGTCCCGAAGGACTGCTAAGGTTGGCAAAAGAGTTAGGGATGAGTTACCACCTCATCAACAGTATGCAAGGAAAGCATCAACGGCAGAAATTCCTCCATGGACAAATCCAATGAAAAGGTCTGGTATGGAGATTCCGACTAGTTTTAGTGAGGACGAGACCGCAGAAACTAGTTCTTCTGCAGATTGA

Network for GWHGAAZE001234

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	2	29	3.30E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-other

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.272
	SRR3591706	second leaf	8.609
	SRR3591707	mature leaf	5.173
	SRR3591708	Shoot apex	17.235
	SRR3591709	Stem	16.865
	SRR3591710	White floral bud	13.894
	SRR3591711	White flower	15.070
	SRR3591712	Green floral bud	18.113
	SRR3591713	Yellow flower	13.447
SRP173429	SRR8316895	Juvenile bud stage	13.528
	SRR8316896	Juvenile bud stage	18.996
	SRR8316897	Juvenile bud stage	10.709
	SRR8316894	Third green stage	8.685
	SRR8316900	Third green stage	20.416
	SRR8316901	Third green stage	20.472
	SRR8316898	Complete white stage	7.295
	SRR8316899	Complete white stage	24.355
	SRR8316903	Complete white stage	14.009
	SRR8316902	Silver flowering stage	7.013
	SRR8316904	Silver flowering stage	9.215
	SRR8316905	Silver flowering stage	4.287
	SRR8316906	Gold flowering stage	13.633
	SRR8316907	Gold flowering stage	16.545
	SRR8316908	Gold flowering stage	13.335
SRP132670	SRR6706286	Control	13.338
	SRR6706287	Light intensity 50%	15.367
	SRR6706288	Light intensity 20%	15.934
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.487
	CNS0095593	Slightly white alabastrum(diploid) 2	13.896
	CNS0095594	Slightly white alabastrum(diploid) 3	14.902
	CNS0095595	Whole white alabastrum(diploid) 2	11.197
	CNS0095596	Whole white alabastrum(diploid) 3	11.986
	CNS0095597	Whole white alabastrum(diploid) 4	11.701
	CNS0095598	Silvery flower (diploied) 1	12.499
	CNS0095599	Silvery flower (diploied) 2	13.646
	CNS0095600	Silvery flower (diploied) 3	15.416
	CNS0095601	Golden flower (diploid) 1	12.725
	CNS0095602	Golden flower (diploid) 2	17.041
	CNS0095603	Golden flower (diploid) 3	16.614
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.382
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.980
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.400
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.876
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.524
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.926
	CNS0095610	Silvery flower (tetraploid) 1	11.311
	CNS0095611	Silvery flower (tetraploid) 2	13.824
	CNS0095612	Silvery flower (tetraploid) 3	13.855
	CNS0095613	Golden flower (tetraploid) 1	8.268
	CNS0095614	Golden flower (tetraploid) 2	9.083
	CNS0095615	Golden flower (tetraploid) 3	17.930
CRA001975	CRR073297	Stem 1	32.968
	CRR073298	Stem 2	26.821
	CRR073299	Stem 3	24.020
	CRR073300	Leaf 1	25.895
	CRR073301	Leaf 2	23.523
	CRR073302	Leaf 3	17.541
	CRR073303	Juvenile bud 1	17.787
	CRR073304	Juvenile bud 2	16.639
	CRR073305	Juvenile bud 3	19.582
	CRR073306	Third green 1	8.649
	CRR073307	Third green 2	7.608
	CRR073308	Third green 3	8.436
	CRR073309	Second white 1	3.418
	CRR073310	Second white 2	8.768
	CRR073311	Second white 3	6.399
	CRR073312	Silver flowering 1	3.583
	CRR073313	Silver flowering 2	4.186
	CRR073314	Silver flowering 3	4.636
	CRR073315	Gold flowering 1	6.373
	CRR073316	Gold flowering 2	11.095
	CRR073317	Gold flowering 3	4.716
	CRR073318	Tawny withering 1	12.591
	CRR073319	Tawny withering 2	12.027
	CRR073320	Tawny withering 3	15.478