Gene detail

Detail information of GWHGAAZE001244

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003632255.1	0	PREDICTED: uncharacterized protein LOC100242629 isoform X1 [Vitis vinifera]
trEMBL	tr\|A0A067FSI0\|A0A067FSI0_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO66417.1}
TAIR10	AT5G12290.1	8E-178	dgd1 suppressor 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	29013785	29032887	+
GWHAAZE00000001	mRNA	29013785	29032887	+
GWHAAZE00000001	exon	29013785	29014005	+
GWHAAZE00000001	exon	29016291	29016405	+
GWHAAZE00000001	exon	29016578	29016781	+
GWHAAZE00000001	exon	29018741	29018902	+
GWHAAZE00000001	exon	29019202	29019396	+
GWHAAZE00000001	exon	29020804	29020904	+
GWHAAZE00000001	exon	29022075	29022164	+
GWHAAZE00000001	exon	29029526	29029598	+
GWHAAZE00000001	exon	29029846	29029874	+
GWHAAZE00000001	exon	29029978	29030101	+
GWHAAZE00000001	exon	29031036	29031146	+
GWHAAZE00000001	exon	29031932	29032032	+
GWHAAZE00000001	exon	29032767	29032887	+
GWHAAZE00000001	CDS	29013785	29014005	+
GWHAAZE00000001	CDS	29016291	29016405	+
GWHAAZE00000001	CDS	29016578	29016781	+
GWHAAZE00000001	CDS	29018741	29018902	+
GWHAAZE00000001	CDS	29019202	29019396	+
GWHAAZE00000001	CDS	29020804	29020904	+
GWHAAZE00000001	CDS	29022075	29022164	+
GWHAAZE00000001	CDS	29029526	29029598	+
GWHAAZE00000001	CDS	29029846	29029874	+
GWHAAZE00000001	CDS	29029978	29030101	+
GWHAAZE00000001	CDS	29031036	29031146	+
GWHAAZE00000001	CDS	29031932	29032032	+
GWHAAZE00000001	CDS	29032767	29032887	+

Transcript Sequence
>GWHTAAZE001246 ATGGAAGTTCCACCTGAAGATCAATCCATGGATCCCAAAACCCTAATCTCATACTACTCCAAATCTATTTGGAACCGACTACTCCGACTCCTTCCCTCTCCTCAATCAAACATTTTTGGGAAATTTTCAAATATATATAAACGCACTACTCGCTCCACTTCACGAAGGCGCACTACTCGTCTTCCTCTTCCACTTCCTTCTAATTCACCTGACTCATTCATGGTTATGCCCGAGGCATGTAAAGTTGTTGATGTTTTGGAGGACATTCTGGAGCATGTCTTTCAAAATTTGCATGAGATCCAGAAGAACTTACAATTTTGGCAATCAAGAGCAGAGGGATCTAATGGTCAGAAAGTTTACTTCATGGTTTTTGAGAGAGGGCCACGAGCATTTATTGATGGCACAGTTCAATTTGTACGTGATTGTGTTAATGAGGGTTCCGGCATGAACCATCTATGCGGTTCTGCATCTGCTCACATATCTGAGAGGATAACTATCTTAAGTAAATTAAGATTTGCTCTGGCTACATTTTTGGCACAGACTGATTCCTCAGTTGATGGGAACTATTCATTCCCTCTAATGTTCGAGAAGCTTCCAGAAGTAAACCAGGAAGGCTCTCAGTGGACAGATTGTGAGATTACAGATTCTATCAACTTGATTAATAAAAATCTTCTCAAATTGGACTCCTACTTATCTGTCCTTGTTGGTGAACACCGGAAACCAAGTAAAGCAACTCTATATTGGATGCGTTACACATGTGGGGTTGTCGGAATCTCTGTCTGTTCAATATGGCTTTTAAAGCATAGTAGATTGACTGGAAGTCCAGATATTGAGAATTGGATTCGTGAGGCAAAGGACTCAACAATTAGCTTTTGGGGTGATCATGTAGAGCAACCGCTTTTGGCTATAAGAGATGAACTTTTTGAGACATTCAGGAAAAGACACAGAGGTGTAATGGAGCTAGAAGAAGTGCAATTAACTTCCGGCTCTCTGCACAGGATGTTGCTGACTTTTAGCGAGCAGACTAAAGGTCAAAAGTTTCCTGACAATGCTTCAGACCAGGAAATGCTAGAAATAGTTATGGCCAGGTATGAGAAGGAACTTATGCATCCAATTCAGAATCTTGTTGGTGGAGAGCTAGCTCGAGCATTACTTATCCAGATTCAGAAACTAAAACTGGACATTGAGACGGCAATGCTTGAACTGAACCAGATACTTAGGGCGAATGAGATAAACTTTGCAATTTTAGCTGCTTTACCAGCTTTCTTTCTGTCCCTTGGTATACTCATGTTAGTGCGTGCATGGTTTAAAAAGGATACTAGAGCAGAAGGCAGGGGAAGGATCGCCCGACTCCAAAGACGGCTAATAATAGTGGAGGTTGAGAAACGGATTATGCAGTTCCAACATTGCATTGATCAAGGACTGGAAAAAGATGCTCAATGCATGTTCGGACTAGTTTTGTATAGCCTGGACAGATTGTACCGGGCTGTGGAGAGGCATGCCAAAGCAACCGGCGAATGGCAATGTTTGAAACAGGATATCATGGATTTAGGGAAGAACGGTCTTCAAACAACACATAAGCTCACTATAACATCACGTATGGTGAACGTTTATGATTGCTTGCTTCCTTCACTAAAACGCCAATAG

Network for GWHGAAZE001244

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0014

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08637.11	NCA2	270	538	8.10E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.649
	SRR3591706	second leaf	9.836
	SRR3591707	mature leaf	7.193
	SRR3591708	Shoot apex	18.939
	SRR3591709	Stem	18.711
	SRR3591710	White floral bud	11.032
	SRR3591711	White flower	13.792
	SRR3591712	Green floral bud	15.202
	SRR3591713	Yellow flower	15.509
SRP173429	SRR8316895	Juvenile bud stage	10.660
	SRR8316896	Juvenile bud stage	16.111
	SRR8316897	Juvenile bud stage	2.843
	SRR8316894	Third green stage	5.594
	SRR8316900	Third green stage	14.996
	SRR8316901	Third green stage	12.975
	SRR8316898	Complete white stage	3.978
	SRR8316899	Complete white stage	13.982
	SRR8316903	Complete white stage	5.551
	SRR8316902	Silver flowering stage	4.266
	SRR8316904	Silver flowering stage	7.717
	SRR8316905	Silver flowering stage	3.051
	SRR8316906	Gold flowering stage	9.296
	SRR8316907	Gold flowering stage	10.530
	SRR8316908	Gold flowering stage	5.069
SRP132670	SRR6706286	Control	7.458
	SRR6706287	Light intensity 50%	8.384
	SRR6706288	Light intensity 20%	8.847
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.383
	CNS0095593	Slightly white alabastrum(diploid) 2	7.822
	CNS0095594	Slightly white alabastrum(diploid) 3	10.911
	CNS0095595	Whole white alabastrum(diploid) 2	7.368
	CNS0095596	Whole white alabastrum(diploid) 3	6.921
	CNS0095597	Whole white alabastrum(diploid) 4	5.918
	CNS0095598	Silvery flower (diploied) 1	6.948
	CNS0095599	Silvery flower (diploied) 2	6.612
	CNS0095600	Silvery flower (diploied) 3	7.294
	CNS0095601	Golden flower (diploid) 1	5.658
	CNS0095602	Golden flower (diploid) 2	6.220
	CNS0095603	Golden flower (diploid) 3	6.824
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.205
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.837
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.776
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.154
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.778
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.004
	CNS0095610	Silvery flower (tetraploid) 1	3.179
	CNS0095611	Silvery flower (tetraploid) 2	3.117
	CNS0095612	Silvery flower (tetraploid) 3	1.947
	CNS0095613	Golden flower (tetraploid) 1	2.001
	CNS0095614	Golden flower (tetraploid) 2	2.862
	CNS0095615	Golden flower (tetraploid) 3	1.399
CRA001975	CRR073297	Stem 1	7.611
	CRR073298	Stem 2	6.323
	CRR073299	Stem 3	4.685
	CRR073300	Leaf 1	6.117
	CRR073301	Leaf 2	4.622
	CRR073302	Leaf 3	5.669
	CRR073303	Juvenile bud 1	7.865
	CRR073304	Juvenile bud 2	3.761
	CRR073305	Juvenile bud 3	4.973
	CRR073306	Third green 1	1.165
	CRR073307	Third green 2	0.723
	CRR073308	Third green 3	0.876
	CRR073309	Second white 1	2.134
	CRR073310	Second white 2	2.573
	CRR073311	Second white 3	3.071
	CRR073312	Silver flowering 1	2.628
	CRR073313	Silver flowering 2	1.376
	CRR073314	Silver flowering 3	0.741
	CRR073315	Gold flowering 1	2.706
	CRR073316	Gold flowering 2	5.301
	CRR073317	Gold flowering 3	2.590
	CRR073318	Tawny withering 1	3.948
	CRR073319	Tawny withering 2	3.332
	CRR073320	Tawny withering 3	5.070