Detail information of GWHGAAZE001260


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHN38371.10Chromodomain-helicase-DNA-binding protein 2 [Glycine soja]
Swissprottr|F4IV99|CHR5_ARATH0Protein CHROMATIN REMODELING 5 {ECO:0000303|PubMed:16547115}
trEMBLtr|F6HA08|F6HA08_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB49028.1}
TAIR10AT2G13370.10chromatin remodeling 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2947094029489455-
GWHAAZE00000001mRNA2947094029489455-
GWHAAZE00000001exon2947094029471352-
GWHAAZE00000001exon2947171629471809-
GWHAAZE00000001exon2947257429472939-
GWHAAZE00000001exon2947474629474927-
GWHAAZE00000001exon2947503929475216-
GWHAAZE00000001exon2947541129475566-
GWHAAZE00000001exon2947603029476266-
GWHAAZE00000001exon2947640529476485-
GWHAAZE00000001exon2947657429476617-
GWHAAZE00000001exon2947675129476922-
GWHAAZE00000001exon2947715829477244-
GWHAAZE00000001exon2947747029477580-
GWHAAZE00000001exon2947855929478755-
GWHAAZE00000001exon2947919229479318-
GWHAAZE00000001exon2948085029481062-
GWHAAZE00000001exon2948165429481717-
GWHAAZE00000001exon2948180829481974-
GWHAAZE00000001exon2948206229482155-
GWHAAZE00000001exon2948269629482763-
GWHAAZE00000001exon2948285529483046-
GWHAAZE00000001exon2948346529483599-
GWHAAZE00000001exon2948368829483793-
GWHAAZE00000001exon2948388329483976-
GWHAAZE00000001exon2948456929484659-
GWHAAZE00000001exon2948524229485276-
GWHAAZE00000001exon2948534929485446-
GWHAAZE00000001exon2948577829485846-
GWHAAZE00000001exon2948618229486285-
GWHAAZE00000001exon2948638329486442-
GWHAAZE00000001exon2948902929489112-
GWHAAZE00000001exon2948929429489455-
GWHAAZE00000001CDS2948929429489455-
GWHAAZE00000001CDS2948902929489112-
GWHAAZE00000001CDS2948638329486442-
GWHAAZE00000001CDS2948618229486285-
GWHAAZE00000001CDS2948577829485846-
GWHAAZE00000001CDS2948534929485446-
GWHAAZE00000001CDS2948524229485276-
GWHAAZE00000001CDS2948456929484659-
GWHAAZE00000001CDS2948388329483976-
GWHAAZE00000001CDS2948368829483793-
GWHAAZE00000001CDS2948346529483599-
GWHAAZE00000001CDS2948285529483046-
GWHAAZE00000001CDS2948269629482763-
GWHAAZE00000001CDS2948206229482155-
GWHAAZE00000001CDS2948180829481974-
GWHAAZE00000001CDS2948165429481717-
GWHAAZE00000001CDS2948085029481062-
GWHAAZE00000001CDS2947919229479318-
GWHAAZE00000001CDS2947855929478755-
GWHAAZE00000001CDS2947747029477580-
GWHAAZE00000001CDS2947715829477244-
GWHAAZE00000001CDS2947675129476922-
GWHAAZE00000001CDS2947657429476617-
GWHAAZE00000001CDS2947640529476485-
GWHAAZE00000001CDS2947603029476266-
GWHAAZE00000001CDS2947541129475566-
GWHAAZE00000001CDS2947503929475216-
GWHAAZE00000001CDS2947474629474927-
GWHAAZE00000001CDS2947257429472939-
GWHAAZE00000001CDS2947171629471809-
GWHAAZE00000001CDS2947094029471352-
Transcript Sequence

Network for GWHGAAZE001260

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00385.25Chromo1021541.10E-15
PF00176.24SNF2_N2745601.30E-63
PF00271.32Helicase_C5897293.40E-16
PF13907.7DUF4208122413161.10E-13
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySNF2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.913
SRR3591706second leaf8.314
SRR3591707mature leaf14.169
SRR3591708Shoot apex9.104
SRR3591709Stem17.859
SRR3591710White floral bud21.164
SRR3591711White flower23.201
SRR3591712Green floral bud15.016
SRR3591713Yellow flower20.753
SRP173429 SRR8316895Juvenile bud stage 9.209
SRR8316896Juvenile bud stage 12.734
SRR8316897Juvenile bud stage 7.888
SRR8316894Third green stage 5.276
SRR8316900Third green stage 14.578
SRR8316901Third green stage 13.845
SRR8316898Complete white stage 3.875
SRR8316899Complete white stage 15.958
SRR8316903Complete white stage 11.981
SRR8316902Silver flowering stage8.051
SRR8316904Silver flowering stage11.332
SRR8316905Silver flowering stage6.188
SRR8316906Gold flowering stage 17.780
SRR8316907Gold flowering stage 17.387
SRR8316908Gold flowering stage 21.276
SRP132670SRR6706286Control9.346
SRR6706287Light intensity 50%10.317
SRR6706288Light intensity 20%11.038
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.994
CNS0095593Slightly white alabastrum(diploid) 26.948
CNS0095594Slightly white alabastrum(diploid) 37.960
CNS0095595Whole white alabastrum(diploid) 26.545
CNS0095596Whole white alabastrum(diploid) 34.781
CNS0095597Whole white alabastrum(diploid) 46.297
CNS0095598Silvery flower (diploied) 111.183
CNS0095599Silvery flower (diploied) 29.765
CNS0095600Silvery flower (diploied) 319.496
CNS0095601Golden flower (diploid) 19.421
CNS0095602Golden flower (diploid) 216.771
CNS0095603Golden flower (diploid) 318.582
CNS0095604Slightly white alabastrum(tetraploid) 17.683
CNS0095605Slightly white alabastrum(tetraploid) 27.826
CNS0095606Slightly white alabastrum(tetraploid) 312.173
CNS0095607Whole white alabastrum(tetraploid) 17.836
CNS0095608Whole white alabastrum(tetraploid) 25.358
CNS0095609Whole white alabastrum(tetraploid) 310.636
CNS0095610Silvery flower (tetraploid) 120.488
CNS0095611Silvery flower (tetraploid) 219.276
CNS0095612Silvery flower (tetraploid) 321.077
CNS0095613Golden flower (tetraploid) 112.363
CNS0095614Golden flower (tetraploid) 217.484
CNS0095615Golden flower (tetraploid) 320.847
CRA001975CRR073297Stem 114.263
CRR073298Stem 211.912
CRR073299Stem 36.503
CRR073300Leaf 116.611
CRR073301Leaf 211.447
CRR073302Leaf 35.947
CRR073303Juvenile bud 17.427
CRR073304Juvenile bud 24.230
CRR073305Juvenile bud 311.174
CRR073306Third green 14.525
CRR073307Third green 23.612
CRR073308Third green 34.389
CRR073309Second white 13.159
CRR073310Second white 26.223
CRR073311Second white 37.535
CRR073312Silver flowering 15.939
CRR073313Silver flowering 25.265
CRR073314Silver flowering 36.226
CRR073315Gold flowering 13.738
CRR073316Gold flowering 27.156
CRR073317Gold flowering 31.612
CRR073318Tawny withering 19.217
CRR073319Tawny withering 29.071
CRR073320Tawny withering 36.557