Gene detail

Detail information of GWHGAAZE001262

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15514.1	2.95107E-77	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068V4R2\|A0A068V4R2_COFCA	1E-77	Coffea canephora DH200=94 genomic scaffold, scaffold_100 {ECO:0000313\|EMBL:CDP15514.1}
TAIR10	AT4G03250.1	2E-45	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	29538376	29541216	+
GWHAAZE00000001	mRNA	29538376	29541216	+
GWHAAZE00000001	exon	29538376	29539039	+
GWHAAZE00000001	exon	29540346	29540425	+
GWHAAZE00000001	exon	29541175	29541216	+
GWHAAZE00000001	CDS	29538376	29539039	+
GWHAAZE00000001	CDS	29540346	29540425	+
GWHAAZE00000001	CDS	29541175	29541216	+

Transcript Sequence
>GWHTAAZE001264 CACCAATATCCATCAGAATCGACGAAACAAGAACTCGCAGATACATTAGGGTTGACAGAAAAACAAGTTTCTGGGTGGTTTTGCCACAGAAGGTTGAAGGACAGAAAGGGAGTGAACGATGAAACTCATGCACAAGGAAGACAAGACCGATCAAGCGGTGTTATACAGGATCGTGGAAGTGGGCTTAGGCAAGATTCATGTGGAAGCACCAAACAAGAGGACTATGTTCTCCGTGAACCGAGGGAAGTTGAAAGTAAAAAAAGGATTACTACTGAAGTCACTCCCCTTGCGGACCCCACAAACGAGCTCGAAGGTCATCATTCTCAAGAAGATGATAGTGGCACTGATGATGATACATCTTCAGGAAGTACCTCACCTTTACCGGATATTTTGCCCCTCAGAATGAACCCCTATATTATCGCGAAATCGAGCAATTTAGCACAGAGTGGGAACATTTTACCCCTGGTGGATATGAAGGGCGTAAAAGGTAGGACAGGGCCGTCGGGATATTTGAAAGTAAAGGGTCGGGTTGAAAATTCTGCTATCACTGCGGTTAAGAGGCAATTGGGAAGGCATTATCGTGAGGATGGTCCACCACTTGCCGTCGATTTCGAGCCACTTCCTCCTGATGCATTTATGTCTTCAAACAAAGAAACCGTTAATAAACCTCTGTATGTAAGTGAACCCGTTCAGTTCCAATCGTCGGACGGTTCTAGGATTTTCAAGAAACCTAATCTTGGCATTAGCATCCGCTATGGTATGTTTCTGTACGATAAGGTTTTGTAA

Network for GWHGAAZE001262

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	1	36	8.80E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-other

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.839
	SRR3591706	second leaf	3.127
	SRR3591707	mature leaf	2.547
	SRR3591708	Shoot apex	5.546
	SRR3591709	Stem	6.412
	SRR3591710	White floral bud	7.418
	SRR3591711	White flower	7.240
	SRR3591712	Green floral bud	7.442
	SRR3591713	Yellow flower	5.609
SRP173429	SRR8316895	Juvenile bud stage	5.273
	SRR8316896	Juvenile bud stage	7.714
	SRR8316897	Juvenile bud stage	4.054
	SRR8316894	Third green stage	3.111
	SRR8316900	Third green stage	5.857
	SRR8316901	Third green stage	5.497
	SRR8316898	Complete white stage	2.184
	SRR8316899	Complete white stage	8.475
	SRR8316903	Complete white stage	3.896
	SRR8316902	Silver flowering stage	2.082
	SRR8316904	Silver flowering stage	2.874
	SRR8316905	Silver flowering stage	1.664
	SRR8316906	Gold flowering stage	4.057
	SRR8316907	Gold flowering stage	3.873
	SRR8316908	Gold flowering stage	4.700
SRP132670	SRR6706286	Control	9.165
	SRR6706287	Light intensity 50%	10.949
	SRR6706288	Light intensity 20%	9.199
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.408
	CNS0095593	Slightly white alabastrum(diploid) 2	2.535
	CNS0095594	Slightly white alabastrum(diploid) 3	4.557
	CNS0095595	Whole white alabastrum(diploid) 2	2.768
	CNS0095596	Whole white alabastrum(diploid) 3	2.125
	CNS0095597	Whole white alabastrum(diploid) 4	3.008
	CNS0095598	Silvery flower (diploied) 1	6.403
	CNS0095599	Silvery flower (diploied) 2	4.728
	CNS0095600	Silvery flower (diploied) 3	5.757
	CNS0095601	Golden flower (diploid) 1	5.407
	CNS0095602	Golden flower (diploid) 2	7.438
	CNS0095603	Golden flower (diploid) 3	5.689
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.622
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.271
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.634
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.684
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.601
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.562
	CNS0095610	Silvery flower (tetraploid) 1	4.887
	CNS0095611	Silvery flower (tetraploid) 2	4.584
	CNS0095612	Silvery flower (tetraploid) 3	3.221
	CNS0095613	Golden flower (tetraploid) 1	2.214
	CNS0095614	Golden flower (tetraploid) 2	3.649
	CNS0095615	Golden flower (tetraploid) 3	7.951
CRA001975	CRR073297	Stem 1	12.058
	CRR073298	Stem 2	10.239
	CRR073299	Stem 3	7.733
	CRR073300	Leaf 1	12.002
	CRR073301	Leaf 2	9.561
	CRR073302	Leaf 3	7.733
	CRR073303	Juvenile bud 1	5.281
	CRR073304	Juvenile bud 2	6.226
	CRR073305	Juvenile bud 3	6.799
	CRR073306	Third green 1	3.667
	CRR073307	Third green 2	2.153
	CRR073308	Third green 3	4.057
	CRR073309	Second white 1	1.044
	CRR073310	Second white 2	3.085
	CRR073311	Second white 3	2.906
	CRR073312	Silver flowering 1	1.406
	CRR073313	Silver flowering 2	0.885
	CRR073314	Silver flowering 3	1.402
	CRR073315	Gold flowering 1	1.313
	CRR073316	Gold flowering 2	3.962
	CRR073317	Gold flowering 3	0.709
	CRR073318	Tawny withering 1	3.966
	CRR073319	Tawny withering 2	2.870
	CRR073320	Tawny withering 3	4.507