Detail information of GWHGAAZE001266


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010645143.10PREDICTED: pentatricopeptide repeat-containing protein At3g20730 [Vitis vinifera]
Swissprottr|Q9LT48|PP244_ARATH8E-177Pentatricopeptide repeat-containing protein At3g20730
trEMBLtr|K4B852|K4B852_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g070710.1.1}
TAIR10AT3G20730.12E-139Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2967547729678573-
GWHAAZE00000001mRNA2967547729678573-
GWHAAZE00000001exon2967547729676564-
GWHAAZE00000001exon2967783529678573-
GWHAAZE00000001CDS2967783529678573-
GWHAAZE00000001CDS2967547729676564-
Transcript Sequence

Network for GWHGAAZE001266

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13041.7PPR_21151618.70E-12
PF13041.7PPR_22162607.10E-08
PF01535.21PPR2923180.53
PF13041.7PPR_24184651.60E-08
PF01535.21PPR4935170.0078
PF01535.21PPR5625871.1
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.717
SRR3591706second leaf0.271
SRR3591707mature leaf0.640
SRR3591708Shoot apex0.945
SRR3591709Stem0.200
SRR3591710White floral bud0.313
SRR3591711White flower0.355
SRR3591712Green floral bud0.445
SRR3591713Yellow flower0.221
SRP173429 SRR8316895Juvenile bud stage 0.373
SRR8316896Juvenile bud stage 0.986
SRR8316897Juvenile bud stage 0.365
SRR8316894Third green stage 0.130
SRR8316900Third green stage 0.601
SRR8316901Third green stage 0.478
SRR8316898Complete white stage 0.053
SRR8316899Complete white stage 0.677
SRR8316903Complete white stage 0.382
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.109
SRR8316905Silver flowering stage0.032
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.252
SRR8316908Gold flowering stage 0.077
SRP132670SRR6706286Control0.367
SRR6706287Light intensity 50%0.281
SRR6706288Light intensity 20%0.354
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.109
CNS0095593Slightly white alabastrum(diploid) 20.247
CNS0095594Slightly white alabastrum(diploid) 30.338
CNS0095595Whole white alabastrum(diploid) 20.089
CNS0095596Whole white alabastrum(diploid) 30.035
CNS0095597Whole white alabastrum(diploid) 40.415
CNS0095598Silvery flower (diploied) 10.249
CNS0095599Silvery flower (diploied) 20.659
CNS0095600Silvery flower (diploied) 30.306
CNS0095601Golden flower (diploid) 10.144
CNS0095602Golden flower (diploid) 20.378
CNS0095603Golden flower (diploid) 30.553
CNS0095604Slightly white alabastrum(tetraploid) 10.193
CNS0095605Slightly white alabastrum(tetraploid) 20.246
CNS0095606Slightly white alabastrum(tetraploid) 30.661
CNS0095607Whole white alabastrum(tetraploid) 10.146
CNS0095608Whole white alabastrum(tetraploid) 20.073
CNS0095609Whole white alabastrum(tetraploid) 30.634
CNS0095610Silvery flower (tetraploid) 10.207
CNS0095611Silvery flower (tetraploid) 20.574
CNS0095612Silvery flower (tetraploid) 30.217
CNS0095613Golden flower (tetraploid) 10.008
CNS0095614Golden flower (tetraploid) 20.073
CNS0095615Golden flower (tetraploid) 30.182
CRA001975CRR073297Stem 10.736
CRR073298Stem 20.506
CRR073299Stem 30.364
CRR073300Leaf 10.207
CRR073301Leaf 20.502
CRR073302Leaf 30.239
CRR073303Juvenile bud 10.036
CRR073304Juvenile bud 20.269
CRR073305Juvenile bud 30.117
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.034
CRR073309Second white 10.000
CRR073310Second white 20.175
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.048
CRR073316Gold flowering 20.362
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.247
CRR073319Tawny withering 20.135
CRR073320Tawny withering 30.925