Gene detail

Detail information of GWHGAAZE001269

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006358668.1	9.96186E-24	PREDICTED: putative methyltransferase At1g22800-like isoform X1 [Solanum tuberosum]
Swissprot	tr\|O80543\|Y1280_ARATH	4E-12	Putative methyltransferase At1g22800
trEMBL	tr\|M1BPM0\|M1BPM0_SOLTU	4E-24	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400049966}
TAIR10	AT1G22800.1	2E-10	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	29711643	29714953	+
GWHAAZE00000001	mRNA	29711643	29714953	+
GWHAAZE00000001	mRNA	29713154	29714953	+
GWHAAZE00000001	exon	29711643	29711830	+
GWHAAZE00000001	exon	29713236	29713506	+
GWHAAZE00000001	exon	29714870	29714953	+
GWHAAZE00000001	exon	29713154	29713506	+
GWHAAZE00000001	five_prime_UTR	29711643	29711830	+
GWHAAZE00000001	five_prime_UTR	29713236	29713374	+
GWHAAZE00000001	CDS	29713375	29713506	+
GWHAAZE00000001	CDS	29714870	29714953	+
GWHAAZE00000001	five_prime_UTR	29713154	29713374	+
GWHAAZE00000001	CDS	29713375	29713506	+
GWHAAZE00000001	CDS	29714870	29714953	+

Transcript Sequence
>GWHTAAZE001271 CCCTACAAAAATTACTTATTTTTGTTAACATTTTTCTAGTCCCTCCTCACACGCCGGCCAACGCCGCCACTTGCCGCCGTCGCCCCCCTTACAATACGAAGCTCGTCGTCCTTCATCAAGCAAATCTCCCACGAACCAATTTTGAGAAAAATCTAGGGCTTTTTACTTGTTACAAACTCTCATTGGAGCTTACCATCAAATAGTCTGGACTGCCCAAACTGGACTTTATACTCAGCATCATCAAGATTTTCCATTCCAAAATCATAGGTGCCGGCCCAAAAGAAAAAGATCCCAAGCAGTGCCATCTTGCAATAAAGTGAAGCAGATATGAGAGGAAGGTGCGGAGCTCTTTCTCGTAATGGTTTACGACTATGGAGAAGATCATTCTGTACCGATAATGTGGATGGGTTGCAGAGCTCCAAGGTTAAAATCTTTGATCGCCACCTGAAACGCAAACAA >GWHTAAZE001272 CGCGACCGAGCTGCATGGTTAATGGGTCCAAATGATTCTTTGGTTGATAATGTGGCAGAGAATCTGCTGGATCGCTTGGAGGTA >GWHTAAZE001273 TCATGGTATTTTGTTACGCAAAATATGTTGCAACCAAGAATGACTTATATGCATATTATCCTTATTCTTACATGTTTTTCAGCTTACCATCAAATAGTCTGGACTGCCCAAACTGGACTTTATACTCAGCATCATCAAGATTTTCCATTCCAAAATCATAGGTGCCGGCCCAAAAGAAAAAGATCCCAAGCAGTGCCATCTTGCAATAAAGTGAAGCAGATATGAGAGGAAGGTGCGGAGCTCTTTCTCGTAATGGTTTACGACTATGGAGAAGATCATTCTGTACCGATAATGTGGATGGGTTGCAGAGCTCCAAGGTTAAAATCTTTGATCGCCACCTGAAACGCAAACAA

Network for GWHGAAZE001269

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18162	NDUFAF5	Thermogenesis	map04714
K18162	NDUFAF5	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.079
	SRR3591711	White flower	0.235
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.032
SRP173429	SRR8316895	Juvenile bud stage	2.701
	SRR8316896	Juvenile bud stage	3.500
	SRR8316897	Juvenile bud stage	0.441
	SRR8316894	Third green stage	1.737
	SRR8316900	Third green stage	2.569
	SRR8316901	Third green stage	3.070
	SRR8316898	Complete white stage	0.928
	SRR8316899	Complete white stage	4.958
	SRR8316903	Complete white stage	1.398
	SRR8316902	Silver flowering stage	1.591
	SRR8316904	Silver flowering stage	1.144
	SRR8316905	Silver flowering stage	0.114
	SRR8316906	Gold flowering stage	2.439
	SRR8316907	Gold flowering stage	2.377
	SRR8316908	Gold flowering stage	1.227
SRP132670	SRR6706286	Control	4.350
	SRR6706287	Light intensity 50%	4.511
	SRR6706288	Light intensity 20%	3.928
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.552
	CNS0095593	Slightly white alabastrum(diploid) 2	1.560
	CNS0095594	Slightly white alabastrum(diploid) 3	2.031
	CNS0095595	Whole white alabastrum(diploid) 2	1.752
	CNS0095596	Whole white alabastrum(diploid) 3	1.351
	CNS0095597	Whole white alabastrum(diploid) 4	1.016
	CNS0095598	Silvery flower (diploied) 1	2.269
	CNS0095599	Silvery flower (diploied) 2	1.318
	CNS0095600	Silvery flower (diploied) 3	3.828
	CNS0095601	Golden flower (diploid) 1	1.376
	CNS0095602	Golden flower (diploid) 2	2.311
	CNS0095603	Golden flower (diploid) 3	1.658
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.158
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.135
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.289
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.121
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.071
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.207
	CNS0095610	Silvery flower (tetraploid) 1	0.210
	CNS0095611	Silvery flower (tetraploid) 2	0.087
	CNS0095612	Silvery flower (tetraploid) 3	0.110
	CNS0095613	Golden flower (tetraploid) 1	0.072
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.164
CRA001975	CRR073297	Stem 1	3.278
	CRR073298	Stem 2	2.811
	CRR073299	Stem 3	2.760
	CRR073300	Leaf 1	5.310
	CRR073301	Leaf 2	3.576
	CRR073302	Leaf 3	3.244
	CRR073303	Juvenile bud 1	2.305
	CRR073304	Juvenile bud 2	2.563
	CRR073305	Juvenile bud 3	3.695
	CRR073306	Third green 1	0.727
	CRR073307	Third green 2	1.709
	CRR073308	Third green 3	1.056
	CRR073309	Second white 1	0.578
	CRR073310	Second white 2	1.788
	CRR073311	Second white 3	1.314
	CRR073312	Silver flowering 1	0.669
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.060
	CRR073315	Gold flowering 1	3.074
	CRR073316	Gold flowering 2	1.970
	CRR073317	Gold flowering 3	1.179
	CRR073318	Tawny withering 1	1.647
	CRR073319	Tawny withering 2	2.679
	CRR073320	Tawny withering 3	2.922