Detail information of GWHGAAZE001290


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrABC59607.14.82598E-40acetyl co-A carboxylase [Buckleya distichophylla]
Swissprottr|Q2MIH8|ACCD_SOLBU2E-40Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic {ECO:0000255|HAMAP-Rule:MF_01395}
trEMBLtr|A1XC16|A1XC16_9MAGN2E-40Acetyl co-A carboxylase {ECO:0000313|EMBL:ABC59607.1} (Fragment)
TAIR10ATCG00500.12E-23acetyl-CoA carboxylase carboxyl transferase subunit beta

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene3033104330332044-
GWHAAZE00000001mRNA3033104330332044-
GWHAAZE00000001exon3033171530332044-
GWHAAZE00000001exon3033104330331387-
GWHAAZE00000001CDS3033171530332044-
GWHAAZE00000001CDS3033104330331387-
Transcript Sequence

Network for GWHGAAZE001290

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01963accD Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Fatty acid metabolismmap01212
Pyruvate metabolismmap00620
Propanoate metabolismmap00640
Carbon fixation pathways in prokaryotesmap00720
Fatty acid biosynthesismap00061

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.060
SRR3591709Stem0.000
SRR3591710White floral bud0.097
SRR3591711White flower0.000
SRR3591712Green floral bud0.020
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.057
SRR8316896Juvenile bud stage 0.039
SRR8316897Juvenile bud stage 0.046
SRR8316894Third green stage 0.290
SRR8316900Third green stage 0.057
SRR8316901Third green stage 0.035
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.021
SRR8316902Silver flowering stage0.070
SRR8316904Silver flowering stage0.103
SRR8316905Silver flowering stage0.024
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.000
SRR6706287Light intensity 50%0.000
SRR6706288Light intensity 20%0.000
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.022
CNS0095593Slightly white alabastrum(diploid) 20.072
CNS0095594Slightly white alabastrum(diploid) 30.014
CNS0095595Whole white alabastrum(diploid) 20.089
CNS0095596Whole white alabastrum(diploid) 30.040
CNS0095597Whole white alabastrum(diploid) 40.318
CNS0095598Silvery flower (diploied) 10.075
CNS0095599Silvery flower (diploied) 20.021
CNS0095600Silvery flower (diploied) 30.030
CNS0095601Golden flower (diploid) 10.046
CNS0095602Golden flower (diploid) 20.161
CNS0095603Golden flower (diploid) 30.106
CNS0095604Slightly white alabastrum(tetraploid) 10.091
CNS0095605Slightly white alabastrum(tetraploid) 20.067
CNS0095606Slightly white alabastrum(tetraploid) 30.105
CNS0095607Whole white alabastrum(tetraploid) 10.186
CNS0095608Whole white alabastrum(tetraploid) 20.016
CNS0095609Whole white alabastrum(tetraploid) 30.473
CNS0095610Silvery flower (tetraploid) 10.292
CNS0095611Silvery flower (tetraploid) 20.418
CNS0095612Silvery flower (tetraploid) 30.106
CNS0095613Golden flower (tetraploid) 10.400
CNS0095614Golden flower (tetraploid) 20.141
CNS0095615Golden flower (tetraploid) 30.120
CRA001975CRR073297Stem 10.115
CRR073298Stem 20.000
CRR073299Stem 30.170
CRR073300Leaf 10.259
CRR073301Leaf 20.017
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.080
CRR073304Juvenile bud 20.028
CRR073305Juvenile bud 30.007
CRR073306Third green 10.108
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.034
CRR073310Second white 20.380
CRR073311Second white 30.476
CRR073312Silver flowering 10.160
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.226
CRR073315Gold flowering 10.027
CRR073316Gold flowering 20.035
CRR073317Gold flowering 30.044
CRR073318Tawny withering 10.015
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.010