Detail information of GWHGAAZE001295


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009338534.10PREDICTED: chromodomain-helicase-DNA-binding protein 1-like isoform X2 [Pyrus x bretschneideri]
Swissprottr|F4IV99|CHR5_ARATH0Protein CHROMATIN REMODELING 5 {ECO:0000303|PubMed:16547115}
trEMBLtr|F6HA08|F6HA08_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB49028.1}
TAIR10AT2G13370.10chromatin remodeling 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene3038261530406134-
GWHAAZE00000001mRNA3038261530406134-
GWHAAZE00000001exon3038261530383027-
GWHAAZE00000001exon3038339530383488-
GWHAAZE00000001exon3038425030384612-
GWHAAZE00000001exon3038642830386649-
GWHAAZE00000001exon3038674730386896-
GWHAAZE00000001exon3038709230387247-
GWHAAZE00000001exon3038768530387921-
GWHAAZE00000001exon3038806030388140-
GWHAAZE00000001exon3038882330388909-
GWHAAZE00000001exon3038913530389245-
GWHAAZE00000001exon3038985430390096-
GWHAAZE00000001exon3039275530392967-
GWHAAZE00000001exon3039356630393629-
GWHAAZE00000001exon3039372030393844-
GWHAAZE00000001exon3039397430394067-
GWHAAZE00000001exon3039460530394672-
GWHAAZE00000001exon3039476430394955-
GWHAAZE00000001exon3039537430395508-
GWHAAZE00000001exon3039559730395684-
GWHAAZE00000001exon3039579430395887-
GWHAAZE00000001exon3039648130396571-
GWHAAZE00000001exon3039715930397193-
GWHAAZE00000001exon3039726730397364-
GWHAAZE00000001exon3039769630397764-
GWHAAZE00000001exon3039809930398202-
GWHAAZE00000001exon3039830030398359-
GWHAAZE00000001exon3040092830401011-
GWHAAZE00000001exon3040119330401417-
GWHAAZE00000001exon3040205930402426-
GWHAAZE00000001exon3040251430402567-
GWHAAZE00000001exon3040266430402706-
GWHAAZE00000001exon3040512930405217-
GWHAAZE00000001exon3040565430406134-
GWHAAZE00000001CDS3040565430406134-
GWHAAZE00000001CDS3040512930405217-
GWHAAZE00000001CDS3040266430402706-
GWHAAZE00000001CDS3040251430402567-
GWHAAZE00000001CDS3040205930402426-
GWHAAZE00000001CDS3040119330401417-
GWHAAZE00000001CDS3040092830401011-
GWHAAZE00000001CDS3039830030398359-
GWHAAZE00000001CDS3039809930398202-
GWHAAZE00000001CDS3039769630397764-
GWHAAZE00000001CDS3039726730397364-
GWHAAZE00000001CDS3039715930397193-
GWHAAZE00000001CDS3039648130396571-
GWHAAZE00000001CDS3039579430395887-
GWHAAZE00000001CDS3039559730395684-
GWHAAZE00000001CDS3039537430395508-
GWHAAZE00000001CDS3039476430394955-
GWHAAZE00000001CDS3039460530394672-
GWHAAZE00000001CDS3039397430394067-
GWHAAZE00000001CDS3039372030393844-
GWHAAZE00000001CDS3039356630393629-
GWHAAZE00000001CDS3039275530392967-
GWHAAZE00000001CDS3038985430390096-
GWHAAZE00000001CDS3038913530389245-
GWHAAZE00000001CDS3038882330388909-
GWHAAZE00000001CDS3038806030388140-
GWHAAZE00000001CDS3038768530387921-
GWHAAZE00000001CDS3038709230387247-
GWHAAZE00000001CDS3038674730386896-
GWHAAZE00000001CDS3038642830386649-
GWHAAZE00000001CDS3038425030384612-
GWHAAZE00000001CDS3038339530383488-
GWHAAZE00000001CDS3038261530383027-
Transcript Sequence

Network for GWHGAAZE001295

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00385.25Chromo4685201.40E-15
PF00176.24SNF2_N6359063.40E-65
PF00271.32Helicase_C93510487.10E-21
PF13907.7DUF4208147415662.00E-13
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySNF2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.474
SRR3591706second leaf8.716
SRR3591707mature leaf13.873
SRR3591708Shoot apex6.967
SRR3591709Stem15.634
SRR3591710White floral bud16.695
SRR3591711White flower21.199
SRR3591712Green floral bud13.560
SRR3591713Yellow flower19.522
SRP173429 SRR8316895Juvenile bud stage 9.453
SRR8316896Juvenile bud stage 12.334
SRR8316897Juvenile bud stage 5.520
SRR8316894Third green stage 6.460
SRR8316900Third green stage 13.135
SRR8316901Third green stage 13.055
SRR8316898Complete white stage 4.712
SRR8316899Complete white stage 14.823
SRR8316903Complete white stage 14.450
SRR8316902Silver flowering stage7.896
SRR8316904Silver flowering stage15.570
SRR8316905Silver flowering stage6.182
SRR8316906Gold flowering stage 22.663
SRR8316907Gold flowering stage 21.073
SRR8316908Gold flowering stage 14.872
SRP132670SRR6706286Control13.156
SRR6706287Light intensity 50%14.824
SRR6706288Light intensity 20%13.738
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.867
CNS0095593Slightly white alabastrum(diploid) 25.925
CNS0095594Slightly white alabastrum(diploid) 36.196
CNS0095595Whole white alabastrum(diploid) 26.095
CNS0095596Whole white alabastrum(diploid) 35.036
CNS0095597Whole white alabastrum(diploid) 45.939
CNS0095598Silvery flower (diploied) 111.878
CNS0095599Silvery flower (diploied) 29.284
CNS0095600Silvery flower (diploied) 320.225
CNS0095601Golden flower (diploid) 19.269
CNS0095602Golden flower (diploid) 222.182
CNS0095603Golden flower (diploid) 321.035
CNS0095604Slightly white alabastrum(tetraploid) 17.151
CNS0095605Slightly white alabastrum(tetraploid) 24.749
CNS0095606Slightly white alabastrum(tetraploid) 315.522
CNS0095607Whole white alabastrum(tetraploid) 15.733
CNS0095608Whole white alabastrum(tetraploid) 26.057
CNS0095609Whole white alabastrum(tetraploid) 310.699
CNS0095610Silvery flower (tetraploid) 119.906
CNS0095611Silvery flower (tetraploid) 215.471
CNS0095612Silvery flower (tetraploid) 317.362
CNS0095613Golden flower (tetraploid) 111.470
CNS0095614Golden flower (tetraploid) 215.428
CNS0095615Golden flower (tetraploid) 323.585
CRA001975CRR073297Stem 111.803
CRR073298Stem 211.103
CRR073299Stem 35.035
CRR073300Leaf 111.302
CRR073301Leaf 29.833
CRR073302Leaf 35.186
CRR073303Juvenile bud 16.206
CRR073304Juvenile bud 23.878
CRR073305Juvenile bud 39.534
CRR073306Third green 14.487
CRR073307Third green 22.428
CRR073308Third green 34.347
CRR073309Second white 12.049
CRR073310Second white 25.656
CRR073311Second white 36.420
CRR073312Silver flowering 15.323
CRR073313Silver flowering 24.891
CRR073314Silver flowering 34.076
CRR073315Gold flowering 11.388
CRR073316Gold flowering 25.892
CRR073317Gold flowering 31.290
CRR073318Tawny withering 16.124
CRR073319Tawny withering 26.273
CRR073320Tawny withering 34.402