Gene detail

Detail information of GWHGAAZE001295

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009338534.1	PREDICTED: chromodomain-helicase-DNA-binding protein 1-like isoform X2 [Pyrus x bretschneideri]
Swissprot	tr\|F4IV99\|CHR5_ARATH	Protein CHROMATIN REMODELING 5 {ECO:0000303\|PubMed:16547115}
trEMBL	tr\|F6HA08\|F6HA08_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49028.1}
TAIR10	AT2G13370.1	chromatin remodeling 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	30382615	30406134	-
GWHAAZE00000001	mRNA	30382615	30406134	-
GWHAAZE00000001	exon	30382615	30383027	-
GWHAAZE00000001	exon	30383395	30383488	-
GWHAAZE00000001	exon	30384250	30384612	-
GWHAAZE00000001	exon	30386428	30386649	-
GWHAAZE00000001	exon	30386747	30386896	-
GWHAAZE00000001	exon	30387092	30387247	-
GWHAAZE00000001	exon	30387685	30387921	-
GWHAAZE00000001	exon	30388060	30388140	-
GWHAAZE00000001	exon	30388823	30388909	-
GWHAAZE00000001	exon	30389135	30389245	-
GWHAAZE00000001	exon	30389854	30390096	-
GWHAAZE00000001	exon	30392755	30392967	-
GWHAAZE00000001	exon	30393566	30393629	-
GWHAAZE00000001	exon	30393720	30393844	-
GWHAAZE00000001	exon	30393974	30394067	-
GWHAAZE00000001	exon	30394605	30394672	-
GWHAAZE00000001	exon	30394764	30394955	-
GWHAAZE00000001	exon	30395374	30395508	-
GWHAAZE00000001	exon	30395597	30395684	-
GWHAAZE00000001	exon	30395794	30395887	-
GWHAAZE00000001	exon	30396481	30396571	-
GWHAAZE00000001	exon	30397159	30397193	-
GWHAAZE00000001	exon	30397267	30397364	-
GWHAAZE00000001	exon	30397696	30397764	-
GWHAAZE00000001	exon	30398099	30398202	-
GWHAAZE00000001	exon	30398300	30398359	-
GWHAAZE00000001	exon	30400928	30401011	-
GWHAAZE00000001	exon	30401193	30401417	-
GWHAAZE00000001	exon	30402059	30402426	-
GWHAAZE00000001	exon	30402514	30402567	-
GWHAAZE00000001	exon	30402664	30402706	-
GWHAAZE00000001	exon	30405129	30405217	-
GWHAAZE00000001	exon	30405654	30406134	-
GWHAAZE00000001	CDS	30405654	30406134	-
GWHAAZE00000001	CDS	30405129	30405217	-
GWHAAZE00000001	CDS	30402664	30402706	-
GWHAAZE00000001	CDS	30402514	30402567	-
GWHAAZE00000001	CDS	30402059	30402426	-
GWHAAZE00000001	CDS	30401193	30401417	-
GWHAAZE00000001	CDS	30400928	30401011	-
GWHAAZE00000001	CDS	30398300	30398359	-
GWHAAZE00000001	CDS	30398099	30398202	-
GWHAAZE00000001	CDS	30397696	30397764	-
GWHAAZE00000001	CDS	30397267	30397364	-
GWHAAZE00000001	CDS	30397159	30397193	-
GWHAAZE00000001	CDS	30396481	30396571	-
GWHAAZE00000001	CDS	30395794	30395887	-
GWHAAZE00000001	CDS	30395597	30395684	-
GWHAAZE00000001	CDS	30395374	30395508	-
GWHAAZE00000001	CDS	30394764	30394955	-
GWHAAZE00000001	CDS	30394605	30394672	-
GWHAAZE00000001	CDS	30393974	30394067	-
GWHAAZE00000001	CDS	30393720	30393844	-
GWHAAZE00000001	CDS	30393566	30393629	-
GWHAAZE00000001	CDS	30392755	30392967	-
GWHAAZE00000001	CDS	30389854	30390096	-
GWHAAZE00000001	CDS	30389135	30389245	-
GWHAAZE00000001	CDS	30388823	30388909	-
GWHAAZE00000001	CDS	30388060	30388140	-
GWHAAZE00000001	CDS	30387685	30387921	-
GWHAAZE00000001	CDS	30387092	30387247	-
GWHAAZE00000001	CDS	30386747	30386896	-
GWHAAZE00000001	CDS	30386428	30386649	-
GWHAAZE00000001	CDS	30384250	30384612	-
GWHAAZE00000001	CDS	30383395	30383488	-
GWHAAZE00000001	CDS	30382615	30383027	-

Transcript Sequence
>GWHTAAZE001299 ATGGCCTTTTTCAGGAACTATTTGAACGAAACGGTAACAGAGGGTACTGTGGATGAGAAAGCCCGGGAGCCTAGTATTGAAAGAGTGCATAATATGGTAGGAAATGAGGACGTAGATGCGACTTCGAGTGATAAAGATTTTGATATGAAGATAGATGGCCAGTTTCAGAGTAGTGATGTTGAACCCGATGATGTCAGTAGGTTGCAAGATGAGGCAGCTGCTGATGAGGGTGGGTTATCGAATTTGCAGCCTTCTGCTAGGAGAAATGCTTCGGCTGGGAAATGGGGTTCGAGTTTTTGGAAAGATTGTCAACCTATGCGAGGCCGTGACGGGTCAGAATCTGGGCAGGAATCAAAAAGCAGTTCTGGGTACAAGAACGAGGAAGGATTGGACAATGATTCATCAGATGGCAAGGATGATAGATCAGAGTGTGAAGATGACGACGACGATGAGCAGAAAGAAGTGGACAAGGATCAGAGAGAAGATGATCCTGATGATGCAGATTTTGATCCTGATTTTGCCGCCACAAGTGGTCACAGGGGGGAGAAGGTTAATCACATTCGCATTACTGAAAAATGCCCCACCTTAGACATTCTCCATTTTAAGTTCCAAGATGGAATGGATTCTTACTATTCCTCCTCCAGTGAACTTCAGACACTAACCTTTTATGAGGACGATGATTTGTATAGGAAATCTAGGGGTAGGCAAAGAGGTAAGAGCGGACACGGTGTAAAGTCCACAAGAGAAATCAAGTCATTTACGTTGTCTAGTCGACGAAAAAGAGGTAGAACATCATTTGAAGAGGAGAATTCGTCAGCAAAGGACTCTGAGAACGATAGTGACGAGGATTTCAAAAAGTTGACGCGAAGAGGTGGAAATCTCTCAAGAAAGAATGGTGGTCGGTCCACTAATACTAAAAGTTCTGGAAGGAACAACGATGTTCGAACGTCAACCCGTTCAGTGCGAAAAGTATCATATGTGGAAAGTGACGACAGTGAAGAAATTGACGATGCCAAGAATAAAAAGAACCAAAAGGATGAGATAGAAGAGGAAGACAGCGATACAATTGAAAAGGTGTTGTGGCATCAGCCAAAGGGCATGGCTGAGGAAGCTTTAAGGAACAACAGATCAACTGAGCCTCTGCTGTTAAGCCACTTATTGGATACTGAACAAGATTGGAATGAGATGGAATTTTTAATCAAGTGGAAAGGCCAGTCACATTTGCATTGTCAATGGAAATCATTTTCTGAGTTACAGAATCTTAGTGGTTTTAAGAAGGTTGTAAATTACACCAAAAAAGTGATGGAGGATGTGAAGTATAGGAGGACCGTCTCCCGTGAGGAGATCGAGGTCAATGATGTGAGCAAGGAAATGGACCTGGATCTCATCAAGCAAAATAGCCAGGTTGAGAGAATAATTGCCGACAGGATCGGCAAGGATAGTTCAGGTGATGTGGTACCAGAGTATTTAGTCAAGTGGCAAGGACTATCATATGCTGAAGCAACATGGGAGAAGGACGTTGATATTGCATTTGCTCAAGAAGCTATTGATGAGTACAAGGTGGAACTCCAGTTCTTCTTCAAGGGCAATAACAAGTTGGTCCCATGTGAAATTAGGATGCTAGAGAGTTCACCTGGTGTGACAAGCCACAGTGATGTTCTTTATTGGCCGTCTTGCTTGTTCCAGCTTCATAAAAGATTTTGCAGTGTGGTCCCTGATTTCTCATTCTGTAAGCAGGCTCGTGAAGCTGCAGTGGCTGTACAAGGAAAAATGGTAGATTTCCAGAGGAGGAAGAGCAAAGGAAGTTTGAGGAAGCTTGATGAACAGCCTGAATGGTTGAAGGGGGGGAAACTTCGAGATTATCAGCTTGAGGGATTGAATTTTCTTGTTAACAGTTGGAGAAACGATACAAATGTTATATTAGCTGATGAAATGGGTCTCGGTAAAACCGTTCAGTCAGTTTCTATGCTTGGTTTTCTACAGAATGCCCAACAAATTCATGGTCCATTTCTTGTTGTTGTACCATTATCAACCTTGTCAAATTGGGCAAAAGAATTCAGGAAGTGGCTGCCTGATATGAATGTTATTATATATGTTGGAGCTCGTGCAAGCCGAGAGGTTTGTCAGCAATATGAGTTCTATTCTGATAAGAAAACCGGCAGAAGTACAAAGTTTGATGCTCTTCTGACTACATATGAAGTACTATTGAAGGATAAGGCCGTGCTCTCCAAAATCAAGTGGAACTATCTTATGGTTGATGAAGCACATAGGTTAAAGAATAGTGAGGCTTCATTGTACACATCACTCTTGGAATTTAGCACCAAGAACAAGTTGCTTATTACCGGTACTCCATTGCAAAACAGTGTTGAAGAACTATGGGCTCTGCTTCACTTTCTTGATCCTGATAAGTTCAAGAGTAAGGATGACTTTGTTCAAAATTACAAGAATCTTAGTTCATTTAATGAAAATGAGCTTGCTAATCTTCATACGGAATTGAGGCCTCACATTCTCCGAAGAGTTATAAAAGATGTGGAGAAGTCCTTGCCTCCGAAAATCGAACGTGTGCTTAGGGTTGAGATGTCCCCCCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGCAACTTCCAGGACTTAAATAAAGGAGTCCGTGGGAATCAGGTTTCACTTTTAAATATTGTGGTAGAGTTGAAGAAGTGTTGCAATCATCCATTCCTATTTGAAAGTGCGGACCATGGTTATGGTGGAGACACGAGCATTACTGGTAGCAGTAAACTGGAGCGAATAATCCTTAGCAGTGGGAAGCTAGTTATACTAGATAAGCTGCTTGACAGATTGCATGAGACTAATCACCGTGTATTAATATTTTCTCAGATGGTTCGAATGCTGGATATACTTGCTGAATACTTGTCATTTAAGGGGTTCAAATATCAAAGGCTTGATGGCAGTACAAAGGCCGAGTTACGCCACCAGGCTATGGACCACTTTAATGCATCTGGTAGTGACGATTTCTGTTTCCTTCTTTCAACTCGTGCTGGTGGCTTGGGTATCAATCTTGCAACAGCCGACACGGTTATCATATTTGACTCGGACTGGAATCCTCAAAATGATTTACAGGCAATGAGTAGAGCCCATAGGATTGGACAGCAAGACGTTGTTAACATCTACAGGTTTGTTACAAGCAAAAGTGTCGAGGAAGATATTTTGGAGCGTGCTAAGAAGAAGATGGTTCTTGACCATTTGGTGATCCAAAAACTAAATGCTGAGGGAAAATTGGAGAAGAAAGAAACAAAGAAAGGGAGTTCCTTTGACAAAGTTGCTAATTTCTGTTCTGCTGAAGATGATGGGAGTTTTTGGAGCCGCTGGATAAAACCGGATGCTGTTTCCCAAGCTGAAGAAGCGTTAGCTCCTCGAGCTGCAAGAAATAGTAAGAGTTATGCGGAGGCTAACCCACCTGAGAGAGCTAATAAAAGGAAAAAGAAAGGAGTCGAGCCTCAGGAGAGATTCCCGAAGCGCCGCAAGGCTGATTATTCTCTTAATTCAGCTCCAGCAATTGAAGGAGCTACTGCTCAAGTAAGAGGATGGTCCTATGGGAATCTTTCAAAGAGAGACGCTACGCGCTTTTTCCGTGTGGTTAAGAAGTTTGGGAATGACAGCCAGATTGACTTGATTGCGGCAGAGGTTGGTGGGGCAATTGAAGCTGCTCCAACTGAATCACAGATTGAGCTTTTTGATGCCTTAATTGATGGTTGTAGAGAAGCTGTTAAAGGAGGAAATCAAGACCCAAAGGGACCTCTGTTGGATTTTTTTGGTGTCCCTGTAAAGGCTGACGAGCTATTGAGCCGTATTGAAGAACTTCAACTCCTAGCAAAGCGCATTAACCGTTACAATGATCCCATCTCACAAATCCAAACACTAGCATATCTCAAACCCAACCTGGGGCTGGTTGCATTATATTTTTCTCTGTTCATATCCTTAGAGGATGATGCGAGATTGCTTCTGGGAATTCATCTTCATGGATTTGGGAATTGGGAAAAGATACGATTAGATGAAAAGCTTGGTCTTACCAAAAAGATTGCTCCGGTTGAGCTTCAACACCATGAGACTTTCCTTCCACGAGCTCCCCAATTAAAGGAAAGGGCTTCTCAACTTCTGGAAATGGAACTTGTGGCTGTTGGTGGGAAGAATTTAAATACAAAAGCGGGTCGTAAAGCTTCTAAGAAGCTGCAGAGGGAAGCTCTTCAGAGCATACCAATGTCCCGAAGCAAGGGAAAGCAAGGGACATCAGGAGCTCCTCCTAAATTTGGAATGAATAATAAGTTGTTGAGAAATCCTCCTAGACCACAAAAGGTTGAACCTCTGGTTAAAGAGGAAGGTGAAATGTCGGATACTGAAGAAGTTTATGAACAGTTCAAGGAAGTCAAATGGAGGGAATGGTGCGAAGATGTTATGGTCAACGAGAAAAGGACCCTTACTCGTCTTCACAGGCTGCAGACTACAAGTGATGATCTCCCCAAGGAAACAGTCATTGTCAAAGTTCGAAATTATTTGGTGCTTCTTGGACGAAGGATTGACCAAATTGTTTTTCAGCATGAGAGGGAGCGGCATAGGCGAGAAAGGATGACAACACGACTGTGGAACTATGTGTCAATGTTTTCGAATACAACAGGGGAGGGACTTCGCACACTATATTCTAAACTCAAAGAGGAACAAGACGCTGAAGCTGGAGTGGGAGCTTCACACCACATGAATGGATCATTGTCACACGGGTCAAGACCTTTCAACAACCAACCGTCACTATTACCCAACCGGGCGGGCCATGACCCAGCAAATTCCGAAGCATGGAAACGAAGGAGGAGAACCGAACCCGACCTGAATCCCCAAAGACCTGCTTCAAGTAGTAGCAACGGTATTCGCATATCCGAACCAGGCTCTTCGGGAATTCTTGGGGCAGGACCCTCTGACACCAGACTCTTTGGCAATAATGAGAGGCCTTATAGGATGCGGCAGACCGGTTTTCCTCCACGATAG

Network for GWHGAAZE001295

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00385.25	Chromo	468	520	1.40E-15
PF00176.24	SNF2_N	635	906	3.40E-65
PF00271.32	Helicase_C	935	1048	7.10E-21
PF13907.7	DUF4208	1474	1566	2.00E-13

Protein Sequence

>GWHPAAZE001297
MAFFRNYLNETVTEGTVDEKAREPSIERVHNMVGNEDVDATSSDKDFDMKIDGQFQSSDVEPDDVSRLQDEAAADEGGLSNLQPSARRNASAGKWGSSFWKDCQPMRGRDGSESGQESKSSSGYKNEEGLDNDSSDGKDDRSECEDDDDDEQKEVDKDQREDDPDDADFDPDFAATSGHRGEKVNHIRITEKCPTLDILHFKFQDGMDSYYSSSSELQTLTFYEDDDLYRKSRGRQRGKSGHGVKSTREIKSFTLSSRRKRGRTSFEEENSSAKDSENDSDEDFKKLTRRGGNLSRKNGGRSTNTKSSGRNNDVRTSTRSVRKVSYVESDDSEEIDDAKNKKNQKDEIEEEDSDTIEKVLWHQPKGMAEEALRNNRSTEPLLLSHLLDTEQDWNEMEFLIKWKGQSHLHCQWKSFSELQNLSGFKKVVNYTKKVMEDVKYRRTVSREEIEVNDVSKEMDLDLIKQNSQVERIIADRIGKDSSGDVVPEYLVKWQGLSYAEATWEKDVDIAFAQEAIDEYKVELQFFFKGNNKLVPCEIRMLESSPGVTSHSDVLYWPSCLFQLHKRFCSVVPDFSFCKQAREAAVAVQGKMVDFQRRKSKGSLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNVIIYVGARASREVCQQYEFYSDKKTGRSTKFDALLTTYEVLLKDKAVLSKIKWNYLMVDEAHRLKNSEASLYTSLLEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFKSKDDFVQNYKNLSSFNENELANLHTELRPHILRRVIKDVEKSLPPKIERVLRVEMSPLQKQYYKWILERNFQDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTSITGSSKLERIILSSGKLVILDKLLDRLHETNHRVLIFSQMVRMLDILAEYLSFKGFKYQRLDGSTKAELRHQAMDHFNASGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQDVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGKLEKKETKKGSSFDKVANFCSAEDDGSFWSRWIKPDAVSQAEEALAPRAARNSKSYAEANPPERANKRKKKGVEPQERFPKRRKADYSLNSAPAIEGATAQVRGWSYGNLSKRDATRFFRVVKKFGNDSQIDLIAAEVGGAIEAAPTESQIELFDALIDGCREAVKGGNQDPKGPLLDFFGVPVKADELLSRIEELQLLAKRINRYNDPISQIQTLAYLKPNLGLVALYFSLFISLEDDARLLLGIHLHGFGNWEKIRLDEKLGLTKKIAPVELQHHETFLPRAPQLKERASQLLEMELVAVGGKNLNTKAGRKASKKLQREALQSIPMSRSKGKQGTSGAPPKFGMNNKLLRNPPRPQKVEPLVKEEGEMSDTEEVYEQFKEVKWREWCEDVMVNEKRTLTRLHRLQTTSDDLPKETVIVKVRNYLVLLGRRIDQIVFQHERERHRRERMTTRLWNYVSMFSNTTGEGLRTLYSKLKEEQDAEAGVGASHHMNGSLSHGSRPFNNQPSLLPNRAGHDPANSEAWKRRRRTEPDLNPQRPASSSSNGIRISEPGSSGILGAGPSDTRLFGNNERPYRMRQTGFPPR

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.474
	SRR3591706	second leaf	8.716
	SRR3591707	mature leaf	13.873
	SRR3591708	Shoot apex	6.967
	SRR3591709	Stem	15.634
	SRR3591710	White floral bud	16.695
	SRR3591711	White flower	21.199
	SRR3591712	Green floral bud	13.560
	SRR3591713	Yellow flower	19.522
SRP173429	SRR8316895	Juvenile bud stage	9.453
	SRR8316896	Juvenile bud stage	12.334
	SRR8316897	Juvenile bud stage	5.520
	SRR8316894	Third green stage	6.460
	SRR8316900	Third green stage	13.135
	SRR8316901	Third green stage	13.055
	SRR8316898	Complete white stage	4.712
	SRR8316899	Complete white stage	14.823
	SRR8316903	Complete white stage	14.450
	SRR8316902	Silver flowering stage	7.896
	SRR8316904	Silver flowering stage	15.570
	SRR8316905	Silver flowering stage	6.182
	SRR8316906	Gold flowering stage	22.663
	SRR8316907	Gold flowering stage	21.073
	SRR8316908	Gold flowering stage	14.872
SRP132670	SRR6706286	Control	13.156
	SRR6706287	Light intensity 50%	14.824
	SRR6706288	Light intensity 20%	13.738
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.867
	CNS0095593	Slightly white alabastrum(diploid) 2	5.925
	CNS0095594	Slightly white alabastrum(diploid) 3	6.196
	CNS0095595	Whole white alabastrum(diploid) 2	6.095
	CNS0095596	Whole white alabastrum(diploid) 3	5.036
	CNS0095597	Whole white alabastrum(diploid) 4	5.939
	CNS0095598	Silvery flower (diploied) 1	11.878
	CNS0095599	Silvery flower (diploied) 2	9.284
	CNS0095600	Silvery flower (diploied) 3	20.225
	CNS0095601	Golden flower (diploid) 1	9.269
	CNS0095602	Golden flower (diploid) 2	22.182
	CNS0095603	Golden flower (diploid) 3	21.035
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.151
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.749
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.522
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.733
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.057
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.699
	CNS0095610	Silvery flower (tetraploid) 1	19.906
	CNS0095611	Silvery flower (tetraploid) 2	15.471
	CNS0095612	Silvery flower (tetraploid) 3	17.362
	CNS0095613	Golden flower (tetraploid) 1	11.470
	CNS0095614	Golden flower (tetraploid) 2	15.428
	CNS0095615	Golden flower (tetraploid) 3	23.585
CRA001975	CRR073297	Stem 1	11.803
	CRR073298	Stem 2	11.103
	CRR073299	Stem 3	5.035
	CRR073300	Leaf 1	11.302
	CRR073301	Leaf 2	9.833
	CRR073302	Leaf 3	5.186
	CRR073303	Juvenile bud 1	6.206
	CRR073304	Juvenile bud 2	3.878
	CRR073305	Juvenile bud 3	9.534
	CRR073306	Third green 1	4.487
	CRR073307	Third green 2	2.428
	CRR073308	Third green 3	4.347
	CRR073309	Second white 1	2.049
	CRR073310	Second white 2	5.656
	CRR073311	Second white 3	6.420
	CRR073312	Silver flowering 1	5.323
	CRR073313	Silver flowering 2	4.891
	CRR073314	Silver flowering 3	4.076
	CRR073315	Gold flowering 1	1.388
	CRR073316	Gold flowering 2	5.892
	CRR073317	Gold flowering 3	1.290
	CRR073318	Tawny withering 1	6.124
	CRR073319	Tawny withering 2	6.273
	CRR073320	Tawny withering 3	4.402