Gene detail

Detail information of GWHGAAZE001299

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009800307.1	0	PREDICTED: uncharacterized protein LOC104246234 [Nicotiana sylvestris]
Swissprot	tr\|F4KBP5\|CHR4_ARATH	0.000000002	Protein CHROMATIN REMODELING 4 {ECO:0000303\|PubMed:16547115}
trEMBL	tr\|A0A068UJ42\|A0A068UJ42_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_33 {ECO:0000313\|EMBL:CDP08501.1}
TAIR10	AT5G12400.1	6E-131	DNA binding;zinc ion binding;DNA binding

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	30516274	30536128	+
GWHAAZE00000001	mRNA	30516274	30536128	+
GWHAAZE00000001	exon	30516274	30517994	+
GWHAAZE00000001	exon	30518367	30518957	+
GWHAAZE00000001	exon	30524629	30525565	+
GWHAAZE00000001	exon	30527146	30527398	+
GWHAAZE00000001	exon	30528741	30528865	+
GWHAAZE00000001	exon	30529660	30530123	+
GWHAAZE00000001	exon	30533164	30533192	+
GWHAAZE00000001	exon	30534973	30535350	+
GWHAAZE00000001	exon	30535974	30536128	+
GWHAAZE00000001	CDS	30516274	30517994	+
GWHAAZE00000001	CDS	30518367	30518957	+
GWHAAZE00000001	CDS	30524629	30525565	+
GWHAAZE00000001	CDS	30527146	30527398	+
GWHAAZE00000001	CDS	30528741	30528865	+
GWHAAZE00000001	CDS	30529660	30530123	+
GWHAAZE00000001	CDS	30533164	30533192	+
GWHAAZE00000001	CDS	30534973	30535350	+
GWHAAZE00000001	CDS	30535974	30536128	+

Transcript Sequence
>GWHTAAZE001303 ATGGATTTTGTAGGTAGAACAGTGAGGAGAGCCTTGAAAGGGACTAGGGTTTTATCGGGGACCGTGAAATCGTACGATTTGACTACTGGTTTGTTCGAGATCGTGTACGAGGACGGAGATTCCGAGGGATTGGAGTACTGTGAAATAGCTGATTTGTTGGAGGGAAAATTGGGGGATCAAATTGCTGCTAAGAAGCGGCGCAGGTTGGCAGTTGATGGCGATTCAGGTAATGATTCTGTTAATTTGTGGGGTAATATTTGTTTGAATGATTGTAGTGATGATATTGAGATGAAAAATGGTGTGGTTCCTGAGGGTAAAGTGAAAACCCTAGAAGAGGAATTGGGGGTGGTTGGTGAGAAGTGTGAAGATACTCTTATTATGGATAGAAATGCAGACATAAATGATTCAGATCACAGGTTGAATTTGAATCATTGTAGTGAAATTAGTGATGGGATTGAGAAGAAAGATGGTGTGAGTGCTGATGGTTCTGTGAAAACCCTAGAAGAGGAATTCGGGCTTCTTGGTGGGAAGTGTGAAGATACTATTGTTATGAACAGAAATGCAGACATAACTGATTCAAATATCAGGTTAAATTTGAATGATGAGTTGAATTCAAATGGTGGAGTTTTTTCGAATCATAGGTTGGATTTAAATGTTGAGTTGAATTTAAGTGATGGGGTGAGTTTAAATGAAGATGGTGATTTGAAGAAAAGTAATGTTATTGATCTGAATTTGGATTTAAATGATGAGGTTAATGGAAATTCAAAAGAGGATGATTTGGGGGGTTCGGTTGTCGATTCTGGGAAGACTGAACGTTGTTTTGACTTGAATTTGGGTTTAGATGACGAAAGTAAGAACTTGGATGCCGAATGTGATGGGCAATTGAAGGAAATTACTTCTTCTCAAATGGATAAAGAAACACAAGTAAGTGAGATGGGAGGAAATGCTGAGATCAAAGGTGGTAGTGTGAATGGTCTTTCAAAGAGAGATCATTTCGAAAGTGTTGAGGAAACTCCATTGACAGGGCTTAGTGGTTCTACTGAGAATATGTTGGGTGATGTAATTCAAAAGGAAGATGGCGATTCGCCTCGAAGTTTGAAGAGAAATGCTACTTTTGGAGTTTTGGATGCTAGCATTGCAAAGGAGAGTTGTTCTGAAAATCAATTGAAGAGTCCTGATGCCGACACATTGGCAAATCACGAGTGTCAAGGGAATTCAGAATTGATGGGCAAAGGAAGACATAGTAGAAAAAGAAGAAAACTTTCTGAAACAGTGTTGAGAAGAAGTACTCGTAGGGGAAGCGCATCTCTTTCTGCCCAAATTCATGTTTCCAGTGCTATGGAATTGGATTCCGTCAATGGTGAATCGCCGTCTCCTGCTGTTAGTGTAGTTTCAGAGGAAAAAATTACAATCTCTAGTCTTGAAGAAGCTGAAGAACGGAACAGTCTTTCTCCAAAGCTGCAGTTACCCCCTTCTTCTGAAAATTTGAACCTAGATGGCATTCCTATTCTGGATCTTTTTTCTGTTTATTCCTTTTTGAGGTCATTTAGCACTTCATTATTTTTGAGTCCATTTGAGTTGGAGGATTTTGTGGCAGCTCTGAGATGCAAGGCTCCTACTTTATTATTTGATTTCATTCATGTTTCTCTTTTACAAACTTTGAGGAAACATTTGGAGTTTCTTTCTGTTGAAAATTTTGAATCTGCTTCTCTTTGCCTGAGGAGTCTTAACTGGGACTTGCTGGACCTGATCACATGGCCCATCTTTATGGTTGAGTACCTTCTAATGCATAGTTCTGGATTAAAACCCGGTTTTGATCTTTCTCACTTGAAACTATTTGAGGGAGATTACTACGAACAACCAGAGTCTTTAAAGATTGAGATACTTCAATGCCTTTGTGATGATGTGATTGAAGTTGAAGCCATAAGATCACAGCTTAACAAAAGAATGCTGGGAACTGAGACTAATACTGACTTTGACCGGGGTACAAGGTTTGATATTTCCAAGAAAAGGAGCTCGTTCTTGAATGAGGATGCTGCAGCTGAAACAGCGGACTGGAACAGTGATGAATGCTATCTTTGTAAAATGGACGGAAATTTAATATGTTGTGATGGTTGCCCAGCTGCCTTTCATTCGAAGTGTGTTGGGGTTGCTGCTAACTTATTGCCTGAAGGTGACTGGTACTGCCCTGAATGTGTTATTGACAAAGACAGTCCATTGATGAGAGTACGAAAGTCAATTCGTGGAGCAGAGTTATTGGGAATAGATCCTTACGGCCGGCTGTATTATAGCAGCTGTGGTTACCTGTTGGTATCAGATTCTTTTGATACTGGATCCTCTTTCAATTATTACCACAGGGATGATTTGAGTGCTGTTATTGAAGCACTAAGATCATCATACATTCTTTATGGCAACATATTAAGTGGAATTACCAAGCTTTGTAATCTTACCGCTATAGTTAATGGATCAAAAAGTGATATGGGTTCAAAGAACACTACTCCAATGTTGCCACCGCCTGTGGTATCTTCAGAAGCTTGTATGAAAGATGAAACGTCCAATGAAGGGATTCCAGAAGAAATATGTGCGGCGAATATGAACCATTCGATGAAGATGGAAAATCCATTGGCAAGTTCTGAAGGATCAGCTGAAATTTCTGAAGCTGTTACAGCAATACAGAATCTTGAAAGAACTAGTTATGTGAACTGTTATAGTTTTGCTCGAGTTGCCTCATCAGTTGCTCGAGAGTTGACCCGTAAATCATCAGATAAGATCTCTAATGTCTCTACGAAATCGATTGAGGAGATAATCTCAGCACAAATGAAGGTGATTTCTCATATGCCTAGAGAGTTTTATTGGTCGAATATTCAGAACTTAAGCGTTGATGCTAGGAAAGAAAAATGCGGGTGGTGCTTCTCTTGCAAAGTGCCTGATGATGATGATGAGAGGGATTGCTTGTTTATCACAAATGATGCTGTTCCTGTTCCGGAGAGTTCTACTAGTGAGTTGTTAGGTATTCCTTCGAGAAAGAATATGAAAGGTCATCTTATTGATGTAAATTGTCAGATCCTTTGCATGGAAGATCGCTTGCGTGGGCTTCTGGTGGGTCCATGGATGAATCCAGATTACTCCAAGCTTTGGCGTGAAAGTGTTCTCAAGGCATCTGATGTTGTGTCAGTGAAACATCTGTTGCTCTTGGTAAGAATGTTATATATATATATTTTTTTTTCCTTTACATGCTTTAAACTTGGGTTGGAGTCAAATTTACGGGGTCTTGCACTTTCAGCAGAGTGGCTAAAACATGTTGACACTGTTGCTACATTGGGTTCTGCTTCTCATATTGTGAATCGTGTGTCTTCAAAGCATGGGATTAGCCGAAAACGGGAACCCAGTTCTTCTCCCAGTGGATTGAGTCTATTTTGGTGGAGGGGTGGTAGGATTTCACGTCACCTGTTCAACTGGAAGGTTTTGCCTCGTTCTTTGGTTTCCAAAGCTGCTCGCCAAGGTGGGGCAAAGAAGATACCTGGAATATTGTATCCTGATAGTTCAGAATTTGCAAAGAGAATAAAAAACGTTACCTGGCAAGCTTCTGTTGAAACATCCAGAAGTGTGGAGCAGCTTGCTCTCCAGGTTAGGGAGCTTGATGCAAATATTAAATGGGATGACATTGAAAACACTAAGCTTATCTCATTGATGGACAAGGAAGCTATAAAATCATTCAGGTCTTTTAAAAAGGTTATAGTCCGTCGAAAATGCTCAGAGGGGAAAGTGGTGAAGTATCTTCTTGATTTTGGCAAAAGAAGATTTATCCCTGATATTGTTACAAAACATGGATCACCCATGATTGAAGAATCGTCAAGCGGAAGGAAGAAATATTGGCTGGAAGAGGCTTATGTTCCCTTGCATCTCCTCAAAGTTTTTGAAGAGAAAAGAATTGCTCGAAAATCCTATAAGATTAGTTCTGAAAAACTTCATGAGAGCGGACTAGTAAGAAAGAAGCCGTCCAAGAAGAAGGGATTCTCGTATCTTTTTTCGAAAGCCGAAGGATCTGAGAATTATCAGTGTGGGCACTGTAATAAAGATGTTCTGATCAGGGACGCTGTAAGCTGCCAGTATTGCCAAGGGTTTTTCCATAAAAGACATGTTAAAAAGTCTGCTGGAGCCGTCATTGCTGAATGTACCTATACATGCCGCCAATGCCAGGTTGGTAAAAATGTAAAGGGTGACACCCAGAAGGGGAAATCGAAGTTGCAGAAGAATAAGAAAATTAACAAAGTGGCAAAGCAAATGGTCACAAAAGTTAATAAAAAATCTGGTAAAAACAAGAAGTCAGAGCAATCGCAAAACAAAAAAAAGGATATTGTTGTTGTACCTTTGCGGCGGTCTGCTAGGAAAATGAAATTTGTGGCAGTGCAAAGCAAAAAGGTTGGAGGTCGCAAGCGAGGGAGGCCAAGGAAATTCAAAAAAGGGATATCAACGAAACCAAAGAAACCAAAGAAAGGTTGGTTCCATGGTGATGCTTTTGGTCTTAACGCTGAAAACGTAAATAATCTTATTGGATTTAAGTGCCACAATTGCCGTAAGCGAACTCCACCTGTCTGCCCCCATTTTCATTCAATGACAAGTGATGAAACCCTAATTGATGGGGTCAAATGA

Network for GWHGAAZE001299

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02791.18	DDT	505	557	1.30E-12
PF00628.30	PHD	691	733	2.60E-08

Protein Sequence

>GWHPAAZE001301
MDFVGRTVRRALKGTRVLSGTVKSYDLTTGLFEIVYEDGDSEGLEYCEIADLLEGKLGDQIAAKKRRRLAVDGDSGNDSVNLWGNICLNDCSDDIEMKNGVVPEGKVKTLEEELGVVGEKCEDTLIMDRNADINDSDHRLNLNHCSEISDGIEKKDGVSADGSVKTLEEEFGLLGGKCEDTIVMNRNADITDSNIRLNLNDELNSNGGVFSNHRLDLNVELNLSDGVSLNEDGDLKKSNVIDLNLDLNDEVNGNSKEDDLGGSVVDSGKTERCFDLNLGLDDESKNLDAECDGQLKEITSSQMDKETQVSEMGGNAEIKGGSVNGLSKRDHFESVEETPLTGLSGSTENMLGDVIQKEDGDSPRSLKRNATFGVLDASIAKESCSENQLKSPDADTLANHECQGNSELMGKGRHSRKRRKLSETVLRRSTRRGSASLSAQIHVSSAMELDSVNGESPSPAVSVVSEEKITISSLEEAEERNSLSPKLQLPPSSENLNLDGIPILDLFSVYSFLRSFSTSLFLSPFELEDFVAALRCKAPTLLFDFIHVSLLQTLRKHLEFLSVENFESASLCLRSLNWDLLDLITWPIFMVEYLLMHSSGLKPGFDLSHLKLFEGDYYEQPESLKIEILQCLCDDVIEVEAIRSQLNKRMLGTETNTDFDRGTRFDISKKRSSFLNEDAAAETADWNSDECYLCKMDGNLICCDGCPAAFHSKCVGVAANLLPEGDWYCPECVIDKDSPLMRVRKSIRGAELLGIDPYGRLYYSSCGYLLVSDSFDTGSSFNYYHRDDLSAVIEALRSSYILYGNILSGITKLCNLTAIVNGSKSDMGSKNTTPMLPPPVVSSEACMKDETSNEGIPEEICAANMNHSMKMENPLASSEGSAEISEAVTAIQNLERTSYVNCYSFARVASSVARELTRKSSDKISNVSTKSIEEIISAQMKVISHMPREFYWSNIQNLSVDARKEKCGWCFSCKVPDDDDERDCLFITNDAVPVPESSTSELLGIPSRKNMKGHLIDVNCQILCMEDRLRGLLVGPWMNPDYSKLWRESVLKASDVVSVKHLLLLVRMLYIYIFFSFTCFKLGLESNLRGLALSAEWLKHVDTVATLGSASHIVNRVSSKHGISRKREPSSSPSGLSLFWWRGGRISRHLFNWKVLPRSLVSKAARQGGAKKIPGILYPDSSEFAKRIKNVTWQASVETSRSVEQLALQVRELDANIKWDDIENTKLISLMDKEAIKSFRSFKKVIVRRKCSEGKVVKYLLDFGKRRFIPDIVTKHGSPMIEESSSGRKKYWLEEAYVPLHLLKVFEEKRIARKSYKISSEKLHESGLVRKKPSKKKGFSYLFSKAEGSENYQCGHCNKDVLIRDAVSCQYCQGFFHKRHVKKSAGAVIAECTYTCRQCQVGKNVKGDTQKGKSKLQKNKKINKVAKQMVTKVNKKSGKNKKSEQSQNKKKDIVVVPLRRSARKMKFVAVQSKKVGGRKRGRPRKFKKGISTKPKKPKKGWFHGDAFGLNAENVNNLIGFKCHNCRKRTPPVCPHFHSMTSDETLIDGVK

Gene family

Gene family	subfamily
Transcription Factors Family	DDT

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.970
	SRR3591706	second leaf	4.747
	SRR3591707	mature leaf	4.972
	SRR3591708	Shoot apex	6.240
	SRR3591709	Stem	8.139
	SRR3591710	White floral bud	8.753
	SRR3591711	White flower	10.623
	SRR3591712	Green floral bud	7.208
	SRR3591713	Yellow flower	6.885
SRP173429	SRR8316895	Juvenile bud stage	4.831
	SRR8316896	Juvenile bud stage	5.821
	SRR8316897	Juvenile bud stage	2.864
	SRR8316894	Third green stage	3.026
	SRR8316900	Third green stage	5.793
	SRR8316901	Third green stage	5.086
	SRR8316898	Complete white stage	1.944
	SRR8316899	Complete white stage	7.241
	SRR8316903	Complete white stage	5.711
	SRR8316902	Silver flowering stage	2.758
	SRR8316904	Silver flowering stage	6.144
	SRR8316905	Silver flowering stage	2.408
	SRR8316906	Gold flowering stage	7.548
	SRR8316907	Gold flowering stage	5.722
	SRR8316908	Gold flowering stage	7.608
SRP132670	SRR6706286	Control	4.273
	SRR6706287	Light intensity 50%	4.311
	SRR6706288	Light intensity 20%	4.301
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.982
	CNS0095593	Slightly white alabastrum(diploid) 2	2.498
	CNS0095594	Slightly white alabastrum(diploid) 3	2.520
	CNS0095595	Whole white alabastrum(diploid) 2	2.821
	CNS0095596	Whole white alabastrum(diploid) 3	1.679
	CNS0095597	Whole white alabastrum(diploid) 4	2.626
	CNS0095598	Silvery flower (diploied) 1	5.411
	CNS0095599	Silvery flower (diploied) 2	4.872
	CNS0095600	Silvery flower (diploied) 3	11.559
	CNS0095601	Golden flower (diploid) 1	5.266
	CNS0095602	Golden flower (diploid) 2	12.714
	CNS0095603	Golden flower (diploid) 3	11.763
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.785
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.443
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.360
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.037
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.121
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.320
	CNS0095610	Silvery flower (tetraploid) 1	8.296
	CNS0095611	Silvery flower (tetraploid) 2	9.513
	CNS0095612	Silvery flower (tetraploid) 3	8.530
	CNS0095613	Golden flower (tetraploid) 1	3.711
	CNS0095614	Golden flower (tetraploid) 2	7.169
	CNS0095615	Golden flower (tetraploid) 3	10.470
CRA001975	CRR073297	Stem 1	4.658
	CRR073298	Stem 2	4.593
	CRR073299	Stem 3	2.429
	CRR073300	Leaf 1	4.208
	CRR073301	Leaf 2	3.224
	CRR073302	Leaf 3	2.404
	CRR073303	Juvenile bud 1	2.248
	CRR073304	Juvenile bud 2	1.911
	CRR073305	Juvenile bud 3	2.774
	CRR073306	Third green 1	2.013
	CRR073307	Third green 2	1.698
	CRR073308	Third green 3	2.126
	CRR073309	Second white 1	0.956
	CRR073310	Second white 2	3.449
	CRR073311	Second white 3	4.102
	CRR073312	Silver flowering 1	2.266
	CRR073313	Silver flowering 2	1.508
	CRR073314	Silver flowering 3	1.903
	CRR073315	Gold flowering 1	1.257
	CRR073316	Gold flowering 2	2.599
	CRR073317	Gold flowering 3	0.784
	CRR073318	Tawny withering 1	2.936
	CRR073319	Tawny withering 2	2.633
	CRR073320	Tawny withering 3	2.464