Gene detail

Detail information of GWHGAAZE001300

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AJB84628.1	0	magnesium-chelatase subunit D [Camellia sinensis]
Swissprot	tr\|O24133\|CHLD_TOBAC	0	Magnesium-chelatase subunit ChlD, chloroplastic (Precursor)
trEMBL	tr\|B9RIG5\|B9RIG5_RICCO	0	Magnesium-chelatase subunit chlD, chloroplast, putative {ECO:0000313\|EMBL:EEF48937.1}
TAIR10	AT1G08520.1	1E-160	ALBINA 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	30560461	30584977	+
GWHAAZE00000001	mRNA	30560461	30584977	+
GWHAAZE00000001	exon	30560461	30560658	+
GWHAAZE00000001	exon	30562652	30562830	+
GWHAAZE00000001	exon	30565422	30565506	+
GWHAAZE00000001	exon	30565860	30566176	+
GWHAAZE00000001	exon	30569542	30569665	+
GWHAAZE00000001	exon	30573719	30573811	+
GWHAAZE00000001	exon	30579559	30579654	+
GWHAAZE00000001	exon	30580380	30580463	+
GWHAAZE00000001	exon	30581425	30581580	+
GWHAAZE00000001	exon	30581878	30581985	+
GWHAAZE00000001	exon	30583518	30583652	+
GWHAAZE00000001	exon	30583856	30584017	+
GWHAAZE00000001	exon	30584682	30584802	+
GWHAAZE00000001	exon	30584892	30584977	+
GWHAAZE00000001	CDS	30560461	30560658	+
GWHAAZE00000001	CDS	30562652	30562830	+
GWHAAZE00000001	CDS	30565422	30565506	+
GWHAAZE00000001	CDS	30565860	30566176	+
GWHAAZE00000001	CDS	30569542	30569665	+
GWHAAZE00000001	CDS	30573719	30573811	+
GWHAAZE00000001	CDS	30579559	30579654	+
GWHAAZE00000001	CDS	30580380	30580463	+
GWHAAZE00000001	CDS	30581425	30581580	+
GWHAAZE00000001	CDS	30581878	30581985	+
GWHAAZE00000001	CDS	30583518	30583652	+
GWHAAZE00000001	CDS	30583856	30584017	+
GWHAAZE00000001	CDS	30584682	30584802	+
GWHAAZE00000001	CDS	30584892	30584977	+

Transcript Sequence
>GWHTAAZE001304 AAACTATACCCCATTCCTTGTTTTCCTTTCAAACCAAAGCGCTTCCTCTCCAATAATCGCTTCCGCATTACCGCCACCGCAACTATACAATCCTCCGGCAACGGCTCTGTCGCCGGAGCTTTGGCCGTCGCCGATCAGAGACCGGATACCACTCGTTACGGCAGACAGTACTTCCCTTTAGCTGCTGTTGTTGGCCAGGATGCCATTAAAACTGCACTTTTACTTGGGGCTGTTGACCGTGAGATTGGAGGGATAGCAATATCCGGAAAACGAGGAACAGCTAAAACCGTAATGGCACGTGGATTGCATGCTATTTTACCACCTATTGATGTAGTCATCGGTTCAATATCTAATGCTGATCCAGCCAGTCCAGAAGGGTGGGAAGATGGACTTGCTGATAGAGTGGAATATGACTCTGCTGGTAATGTCAAGGCTCAAATAGTCAGATCTCCTTTTGTCCAGATTCCACTTGGTGTTACAGAAGATAGGCTAATTGGATCTGTTGATGTTGAGGAGTCCGTGAAATCCGGAACAACTGTTTTCCAGCCTGGCCTTCTTGCTGAAGCTCATAGAGGAGTTTTATACGTTGACGAGATTAATCTTTTGGATGAGGGTATTAGTAATTTGCTTCTTAATGTATTGACCGAGGGAGTTAATATAGTTGAAAGAGAGGGTATCAGCTTTCGGCACCCGTGCAAGCCACTTCTAATTGCAACTTATAATCCAGAAGAGGGTGCTGTACGTGAACATTTACTCGACAGAATTGCAATTAATTTAAGTGCAGATCTTCCAATGAGTTTTGAAGATCGTGTTGCAGCTGTAGGAATTGCAACACAATTTCAGGAACATAGCAATGAAGTTTTCCAAATGATGGAGGAAGAAACAGACCTTGCAAAGACCCAGATTATTTTGGCAAGGGAGTACTTGAAGGATGTCAGCATCAGCAGAGATCAATTAAAATACCTGGTTATGGAAGCCCTCCGGGGTGGTTGCCAGGGACATAGAGCTGAGCTATATGCTGCCCGTGTTGCCAAATGCTTGGCTGCTGTTGAAGGACGAGAAAAAGTTGGTGTGGATGACCTGAAGAAAGCTAGACGCAAAGGGAAGGCCGGGAGGGCAAAAAATGTCATATTTTCTGAGGATAGAGGTCGATATATTAAGCCAATGCTTCCAAAGGGTCCTGTAAAGAGATTAGCCGTTGATGCAACTCTTAGAGCAGCTGCACCGTATCAGAAATTGCGGAGGGAAAGGGATACCCTGAAGATTAGGAAAGTTTTTGTAGAGAAAACTGACATGAGAGCTAAAAGAATGGCACGAAAAGCTGGAGCCCTGGTAATATTTTTGGTTGATGCTAGTGGAAGCATGGCATTAAATCGAATGCAGAATGCTAAAGGTGCAGCACTTAAATTACTGGCAGAGAGTTACACAAGCAGAGATCAGGTAGCAATCATTCCTTTCCGTGGAGATTCAGCAGAAGTTTTGTTGCCTCCTTCAAGGTCAATTTCAATGGCACGAAATCGTCTTGAAAGACTTCCATGTGGCGGAGGTTCTCCCCTAGCTCATGGCCTTACCACGGCTGTGAGGGTTGGACTAAATGCCGAGAAGAGTGGTGATGTTGGCCGCATAATGATAGTTGCGATAACTGATGGTAGAGCCAATATTTCACTCAAAAGATCCAATGATCCTGAAGCTGCGGCTGCTTCTGATGCACCCAGACCTTCTGCTCAAGAACTGAAGGATGAGATTCTTGAAGTGGCTGGTAAAGTATACAAAGCTGGAATGTCTCTCCTTGTCATTGACACGGAAAATAAGTTTGTTTCAACTGGATTTGCCAAAGAGATTGCCAGAGTTGCTCAAGGAAAATATTACTACTTGCCAAATGCCTCAGACGCAGTTATCTCCGCAACAACGAAGGAAGCATTATCAGACTTAAAAAGCTCTTAA

Network for GWHGAAZE001300

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01078.22	Mg_chelatase	177	245	1.00E-06
PF17863.2	AAA_lid_2	322	364	7.10E-09
PF13519.7	VWA_2	445	550	4.40E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03404	chlD, bchD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.090
	SRR3591706	second leaf	98.824
	SRR3591707	mature leaf	82.939
	SRR3591708	Shoot apex	77.177
	SRR3591709	Stem	17.136
	SRR3591710	White floral bud	5.124
	SRR3591711	White flower	4.640
	SRR3591712	Green floral bud	9.668
	SRR3591713	Yellow flower	7.994
SRP173429	SRR8316895	Juvenile bud stage	24.082
	SRR8316896	Juvenile bud stage	28.015
	SRR8316897	Juvenile bud stage	15.948
	SRR8316894	Third green stage	11.601
	SRR8316900	Third green stage	26.320
	SRR8316901	Third green stage	23.718
	SRR8316898	Complete white stage	4.265
	SRR8316899	Complete white stage	18.025
	SRR8316903	Complete white stage	10.428
	SRR8316902	Silver flowering stage	2.309
	SRR8316904	Silver flowering stage	3.868
	SRR8316905	Silver flowering stage	2.122
	SRR8316906	Gold flowering stage	8.256
	SRR8316907	Gold flowering stage	7.180
	SRR8316908	Gold flowering stage	6.731
SRP132670	SRR6706286	Control	19.483
	SRR6706287	Light intensity 50%	16.840
	SRR6706288	Light intensity 20%	20.207
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.959
	CNS0095593	Slightly white alabastrum(diploid) 2	10.255
	CNS0095594	Slightly white alabastrum(diploid) 3	10.867
	CNS0095595	Whole white alabastrum(diploid) 2	14.263
	CNS0095596	Whole white alabastrum(diploid) 3	12.980
	CNS0095597	Whole white alabastrum(diploid) 4	8.788
	CNS0095598	Silvery flower (diploied) 1	25.352
	CNS0095599	Silvery flower (diploied) 2	19.268
	CNS0095600	Silvery flower (diploied) 3	14.375
	CNS0095601	Golden flower (diploid) 1	23.542
	CNS0095602	Golden flower (diploid) 2	20.315
	CNS0095603	Golden flower (diploid) 3	19.820
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.671
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.539
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.483
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.094
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.494
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.003
	CNS0095610	Silvery flower (tetraploid) 1	14.216
	CNS0095611	Silvery flower (tetraploid) 2	21.958
	CNS0095612	Silvery flower (tetraploid) 3	13.109
	CNS0095613	Golden flower (tetraploid) 1	12.330
	CNS0095614	Golden flower (tetraploid) 2	16.307
	CNS0095615	Golden flower (tetraploid) 3	17.754
CRA001975	CRR073297	Stem 1	38.593
	CRR073298	Stem 2	33.364
	CRR073299	Stem 3	28.855
	CRR073300	Leaf 1	17.236
	CRR073301	Leaf 2	19.057
	CRR073302	Leaf 3	12.568
	CRR073303	Juvenile bud 1	11.171
	CRR073304	Juvenile bud 2	8.283
	CRR073305	Juvenile bud 3	15.440
	CRR073306	Third green 1	2.728
	CRR073307	Third green 2	2.238
	CRR073308	Third green 3	1.832
	CRR073309	Second white 1	2.086
	CRR073310	Second white 2	5.779
	CRR073311	Second white 3	4.869
	CRR073312	Silver flowering 1	6.490
	CRR073313	Silver flowering 2	6.840
	CRR073314	Silver flowering 3	5.420
	CRR073315	Gold flowering 1	40.321
	CRR073316	Gold flowering 2	65.345
	CRR073317	Gold flowering 3	29.524
	CRR073318	Tawny withering 1	14.421
	CRR073319	Tawny withering 2	14.269
	CRR073320	Tawny withering 3	14.823